miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 57249 0.83 0.059026
Target:  5'- gGCCucgGCGUCCGCgcggCCCUCGaCGGCCUCg -3'
miRNA:   3'- -CGG---UGUAGGCGa---GGGAGCcGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 117871 0.79 0.112229
Target:  5'- cGUCGCGUUCGC-CCCUCGGCGccgacaccuccGCCUCu -3'
miRNA:   3'- -CGGUGUAGGCGaGGGAGCCGC-----------CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 50834 0.79 0.112229
Target:  5'- gGCCcgcGCcgCCGUcCCCUCGGCGGCCg- -3'
miRNA:   3'- -CGG---UGuaGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 109931 0.78 0.130511
Target:  5'- cGCCGCcggCCuCUcCCCUgGGCGGCCUCg -3'
miRNA:   3'- -CGGUGua-GGcGA-GGGAgCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 57465 0.77 0.144188
Target:  5'- gGCCAgGUgCCGCgCCg-CGGCGGCCUCg -3'
miRNA:   3'- -CGGUgUA-GGCGaGGgaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 106076 0.77 0.147807
Target:  5'- cGCCACcgCCGCgCCgacugggaCUCGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGaGG--------GAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 97858 0.77 0.151508
Target:  5'- cGCguCGUCCGCgUUCUCGGCGGCCg- -3'
miRNA:   3'- -CGguGUAGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 3941 0.76 0.175102
Target:  5'- gGCCGgGcgcgggcUCCGCgggCCCgggccgcgCGGCGGCCUCg -3'
miRNA:   3'- -CGGUgU-------AGGCGa--GGGa-------GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 23234 0.76 0.179848
Target:  5'- gGUCACcUCCuCgCCCUCGGgGGCCUCg -3'
miRNA:   3'- -CGGUGuAGGcGaGGGAGCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 37182 0.76 0.179848
Target:  5'- cGCCGCGgccCCGCggCCCUCGGCcuccuccGCCUCc -3'
miRNA:   3'- -CGGUGUa--GGCGa-GGGAGCCGc------CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 38860 0.75 0.184261
Target:  5'- cCCACAcgCCGCggCCCUCcgaGGCGGcCCUCg -3'
miRNA:   3'- cGGUGUa-GGCGa-GGGAG---CCGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 137424 0.75 0.198078
Target:  5'- cGCCGCcgCCGCggggucCgCCUCcGCGGCCUCc -3'
miRNA:   3'- -CGGUGuaGGCGa-----G-GGAGcCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 6141 0.75 0.207784
Target:  5'- gGCCGCggCCGCgaggaCGGCGGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 128996 0.75 0.207784
Target:  5'- gGCCACGUCCGCcgugaugCCCUUcaGcGCGGCgUCg -3'
miRNA:   3'- -CGGUGUAGGCGa------GGGAG--C-CGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 31807 0.74 0.217899
Target:  5'- cGCCGCGUCCuccuccucCUCCCUCcccGcCGGCCUCg -3'
miRNA:   3'- -CGGUGUAGGc-------GAGGGAGc--C-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 82393 0.74 0.223112
Target:  5'- gGCCACGagcUCCGCgCCCgagGGCGGCCcCg -3'
miRNA:   3'- -CGGUGU---AGGCGaGGGag-CCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 39145 0.74 0.223112
Target:  5'- gGCCugGgacCCGCgCCg-CGGCGGCCUCu -3'
miRNA:   3'- -CGGugUa--GGCGaGGgaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 35853 0.74 0.239391
Target:  5'- cGCCGC--CCGCUCUccgcgCUCGGCgcccGGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGAGG-----GAGCCG----CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 40403 0.73 0.245034
Target:  5'- uCUGCGUCCGCgg---CGGCGGCCUCg -3'
miRNA:   3'- cGGUGUAGGCGagggaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 103799 0.73 0.245034
Target:  5'- cGCUGCAggCCGCgCUgUCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa-GGCGaGGgAGCCGCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.