miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 1 0.73 0.262625
Target:  5'- cCCACcccCCGCUCCC-CGGgGGCCg- -3'
miRNA:   3'- cGGUGua-GGCGAGGGaGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 2403 0.72 0.307642
Target:  5'- gGCCGCGgagcUCgGCgaggCCC-CGGCGGCCg- -3'
miRNA:   3'- -CGGUGU----AGgCGa---GGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 3113 0.72 0.309698
Target:  5'- cGCCGCggcgcggGUCCcaggccgggcgcgggGCgCCCUCGGCGGgCUCg -3'
miRNA:   3'- -CGGUG-------UAGG---------------CGaGGGAGCCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 3941 0.76 0.175102
Target:  5'- gGCCGgGcgcgggcUCCGCgggCCCgggccgcgCGGCGGCCUCg -3'
miRNA:   3'- -CGGUgU-------AGGCGa--GGGa-------GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 4022 0.69 0.457915
Target:  5'- gGCCGCGg-CGUaggUCCa--GGCGGCCUCg -3'
miRNA:   3'- -CGGUGUagGCG---AGGgagCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 5902 0.68 0.522381
Target:  5'- cGCUGCGagUGCUgCCggggUCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUagGCGAgGG----AGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 6141 0.75 0.207784
Target:  5'- gGCCGCggCCGCgaggaCGGCGGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 6949 0.66 0.599883
Target:  5'- cGCCAUcUUgGC-CCCUCGaCGGCCa- -3'
miRNA:   3'- -CGGUGuAGgCGaGGGAGCcGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 7011 0.69 0.457915
Target:  5'- -gCAUGUCCgGCcCCCgCGGCGGCCa- -3'
miRNA:   3'- cgGUGUAGG-CGaGGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 7269 0.69 0.431608
Target:  5'- cCCACGUggCCGC--CCUCGGCcaauggGGCCUCa -3'
miRNA:   3'- cGGUGUA--GGCGagGGAGCCG------CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 8304 0.7 0.372266
Target:  5'- cGCCGCGUcCCGC-CCCgagcccccggggCGcGCGGgCCUCg -3'
miRNA:   3'- -CGGUGUA-GGCGaGGGa-----------GC-CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 9468 0.7 0.381765
Target:  5'- uCCGCGUCCGCUucggCCCcCcGCGGCCg- -3'
miRNA:   3'- cGGUGUAGGCGA----GGGaGcCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 10511 0.72 0.28766
Target:  5'- cGCCGCAggCGCgUCCC-CGGCGcgggcGCCUCu -3'
miRNA:   3'- -CGGUGUagGCG-AGGGaGCCGC-----CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 11363 0.66 0.599883
Target:  5'- cGCUACcgCgCGCUCCgCUCG-CcGCCUCu -3'
miRNA:   3'- -CGGUGuaG-GCGAGG-GAGCcGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 12799 0.69 0.466873
Target:  5'- cGgCGCGcCCGCUCCCUCcGCGuccCCUCu -3'
miRNA:   3'- -CgGUGUaGGCGAGGGAGcCGCc--GGAG- -5'
29638 3' -62.1 NC_006151.1 + 15917 0.73 0.25665
Target:  5'- cCCGCcgCCGC-CCCgugaGGCGGgCCUCg -3'
miRNA:   3'- cGGUGuaGGCGaGGGag--CCGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 17330 0.67 0.54146
Target:  5'- cGCCGCGUCaGCUCgugcgUCUCGGUGGUg-- -3'
miRNA:   3'- -CGGUGUAGgCGAG-----GGAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 19723 0.66 0.649222
Target:  5'- gGCCGag-CCGaagCCCgcgCGGCGGUCgUCg -3'
miRNA:   3'- -CGGUguaGGCga-GGGa--GCCGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 23234 0.76 0.179848
Target:  5'- gGUCACcUCCuCgCCCUCGGgGGCCUCg -3'
miRNA:   3'- -CGGUGuAGGcGaGGGAGCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 24868 0.66 0.590055
Target:  5'- aCCACcguGUCCGCcucgCCCggcCGGCgGGCCa- -3'
miRNA:   3'- cGGUG---UAGGCGa---GGGa--GCCG-CCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.