miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 141680 0.69 0.431608
Target:  5'- aGgCAUGUCUGcCUCCCaCGGCGGCUg- -3'
miRNA:   3'- -CgGUGUAGGC-GAGGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 139583 0.67 0.560765
Target:  5'- cGCCugGgcUCgCGCcccCCCgagCGGCGGCC-Cg -3'
miRNA:   3'- -CGGugU--AG-GCGa--GGGa--GCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 139260 0.69 0.423037
Target:  5'- gGCCACGcccgCgCGCUCCgaCGGCGGacgcgccgcCCUCg -3'
miRNA:   3'- -CGGUGUa---G-GCGAGGgaGCCGCC---------GGAG- -5'
29638 3' -62.1 NC_006151.1 + 137424 0.75 0.198078
Target:  5'- cGCCGCcgCCGCggggucCgCCUCcGCGGCCUCc -3'
miRNA:   3'- -CGGUGuaGGCGa-----G-GGAGcCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 135991 0.66 0.639351
Target:  5'- gGCCACcUUCGC-CCUccaCGaCGGCCUCa -3'
miRNA:   3'- -CGGUGuAGGCGaGGGa--GCcGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 135901 0.7 0.373838
Target:  5'- cGUCGCcgCCGCgaCCC-CGGCGGUCg- -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 135473 0.69 0.423037
Target:  5'- cGCCAgcgUGUCCGCgcgggCCaggcggCGcGCGGCCUCg -3'
miRNA:   3'- -CGGU---GUAGGCGa----GGga----GC-CGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 135227 0.71 0.366024
Target:  5'- gGCCACGUCggacaucaccaCGUUgCUCUCGGCGGUCa- -3'
miRNA:   3'- -CGGUGUAG-----------GCGA-GGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 134952 0.67 0.551086
Target:  5'- gGCUACAUCuUGCaggCCUCGGCcaGCCUCc -3'
miRNA:   3'- -CGGUGUAG-GCGag-GGAGCCGc-CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 133421 0.66 0.639351
Target:  5'- gGCCGCGgaCGCgggggUCUUGGCGGCCg- -3'
miRNA:   3'- -CGGUGUagGCGag---GGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 133115 0.68 0.483221
Target:  5'- cGCCGCGUCCGuCgucgggggguucaugUCCCagagggacUCGGCggcggcgcgggcgugGGCCUCg -3'
miRNA:   3'- -CGGUGUAGGC-G---------------AGGG--------AGCCG---------------CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 129188 0.71 0.350737
Target:  5'- cGCCACggCCGCcgucagcaccUCCC-CGGgGGCCg- -3'
miRNA:   3'- -CGGUGuaGGCG----------AGGGaGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 128996 0.75 0.207784
Target:  5'- gGCCACGUCCGCcgugaugCCCUUcaGcGCGGCgUCg -3'
miRNA:   3'- -CGGUGUAGGCGa------GGGAG--C-CGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 128774 0.68 0.512939
Target:  5'- --gGCGUaCCGCUCcacggCCUCGGUcGCCUCg -3'
miRNA:   3'- cggUGUA-GGCGAG-----GGAGCCGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 126074 0.69 0.457915
Target:  5'- uGCCACGggggCCGUgaucucggCCgUCGGCGGCa-- -3'
miRNA:   3'- -CGGUGUa---GGCGa-------GGgAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 124930 0.66 0.599883
Target:  5'- uUCACGUCgCGggCCCUgGGCG-CCUCc -3'
miRNA:   3'- cGGUGUAG-GCgaGGGAgCCGCcGGAG- -5'
29638 3' -62.1 NC_006151.1 + 123892 0.67 0.551086
Target:  5'- cGCCGCGgccCCGCcgUgCggcgCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa--GGCGa-GgGa---GCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 122892 0.68 0.503568
Target:  5'- gGCCAa--CCGCgacgCCCUCGaGCG-CCUCc -3'
miRNA:   3'- -CGGUguaGGCGa---GGGAGC-CGCcGGAG- -5'
29638 3' -62.1 NC_006151.1 + 120870 0.73 0.262625
Target:  5'- aGCCACcugcUCCGCUCCgUCa-UGGCCUCg -3'
miRNA:   3'- -CGGUGu---AGGCGAGGgAGccGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 119573 0.71 0.366024
Target:  5'- cGCCA---CCGCUCCCgcgcuUCGGCGcGCCg- -3'
miRNA:   3'- -CGGUguaGGCGAGGG-----AGCCGC-CGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.