miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 5' -54.4 NC_006151.1 + 5639 0.67 0.92216
Target:  5'- cCGGGcGCCGAGACCGgcCCGGCGgCGg- -3'
miRNA:   3'- aGCUC-UGGCUCUGGU--GGUUGUgGUgg -5'
29638 5' -54.4 NC_006151.1 + 5668 0.66 0.955095
Target:  5'- -gGAGGCUGGGGaagcgggcccCCGCCGugccggcgcuGCGgCCACCg -3'
miRNA:   3'- agCUCUGGCUCU----------GGUGGU----------UGU-GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 5743 0.74 0.607782
Target:  5'- cCGAGGCCGc-GCCGCCGGCccggGCuCACCg -3'
miRNA:   3'- aGCUCUGGCucUGGUGGUUG----UG-GUGG- -5'
29638 5' -54.4 NC_006151.1 + 5873 0.71 0.749104
Target:  5'- cCGGGGCCGccggGGGCC-CCGGCcucuGCCGCUg -3'
miRNA:   3'- aGCUCUGGC----UCUGGuGGUUG----UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 5921 0.71 0.768226
Target:  5'- gUCGGcGGCCGGGGCCcggaGCCGGC-CCgggACCg -3'
miRNA:   3'- -AGCU-CUGGCUCUGG----UGGUUGuGG---UGG- -5'
29638 5' -54.4 NC_006151.1 + 6234 0.66 0.958866
Target:  5'- gCGGcGCCGGGAgCC-CUGGCuGCCGCCg -3'
miRNA:   3'- aGCUcUGGCUCU-GGuGGUUG-UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 7595 0.74 0.577198
Target:  5'- cUCGAGACCccuGAGACCcCCGAgACCcucCCg -3'
miRNA:   3'- -AGCUCUGG---CUCUGGuGGUUgUGGu--GG- -5'
29638 5' -54.4 NC_006151.1 + 7716 0.66 0.955095
Target:  5'- gUCG-GACCgGGGACCGgCGACcggACCcgaACCg -3'
miRNA:   3'- -AGCuCUGG-CUCUGGUgGUUG---UGG---UGG- -5'
29638 5' -54.4 NC_006151.1 + 8183 0.69 0.855141
Target:  5'- cUCG-GGCCGGGACC-CCGgggGCGCU-CCg -3'
miRNA:   3'- -AGCuCUGGCUCUGGuGGU---UGUGGuGG- -5'
29638 5' -54.4 NC_006151.1 + 8987 0.72 0.71967
Target:  5'- gUCGGG--CGAuGGCCGCCGcCACCGCCc -3'
miRNA:   3'- -AGCUCugGCU-CUGGUGGUuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 9043 0.65 0.962069
Target:  5'- cCGGGGcgccccgcgugcuCCGGGGgCGCCGGCcgGCCAUCc -3'
miRNA:   3'- aGCUCU-------------GGCUCUgGUGGUUG--UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 10996 0.67 0.9377
Target:  5'- gCG-GGCCgGGGGCC-CCGGCucgcCCGCCc -3'
miRNA:   3'- aGCuCUGG-CUCUGGuGGUUGu---GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 11337 0.72 0.71967
Target:  5'- gCGAuACCGcgcGGGCCGCCcgcgGGCGCUACCg -3'
miRNA:   3'- aGCUcUGGC---UCUGGUGG----UUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 11889 0.66 0.948586
Target:  5'- uUCGGGccgcAUCGAGGCgcgucgggguuuucgCGCCcucGCGCCGCCg -3'
miRNA:   3'- -AGCUC----UGGCUCUG---------------GUGGu--UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 12430 0.7 0.795974
Target:  5'- gUGAGGCgaGuGACCGCCAccgcccucuacCACCACCa -3'
miRNA:   3'- aGCUCUGg-CuCUGGUGGUu----------GUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 13183 0.69 0.839142
Target:  5'- cCGcGGCCGucucgGGGCC-CgCGGCGCCGCCa -3'
miRNA:   3'- aGCuCUGGC-----UCUGGuG-GUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 13472 0.67 0.9377
Target:  5'- cCGcGGGCCG-GACCGCC----CCGCCg -3'
miRNA:   3'- aGC-UCUGGCuCUGGUGGuuguGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 14579 0.68 0.904467
Target:  5'- gCGGGACCGGcuggucGACCACCcAUucaauCCAUCc -3'
miRNA:   3'- aGCUCUGGCU------CUGGUGGuUGu----GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 15107 0.75 0.556994
Target:  5'- cUCGGGGCCGAcgugaACCGCCucuuucgcGGCAUCGCCg -3'
miRNA:   3'- -AGCUCUGGCUc----UGGUGG--------UUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 15396 0.69 0.87033
Target:  5'- aCGAGGaCGAcGCCgGCUcgGACACCACCg -3'
miRNA:   3'- aGCUCUgGCUcUGG-UGG--UUGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.