miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 5' -54.4 NC_006151.1 + 912 0.82 0.245939
Target:  5'- aCGAcGAccacCCGGGACCACCAccaccaacaACACCACCa -3'
miRNA:   3'- aGCU-CU----GGCUCUGGUGGU---------UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1132 0.73 0.648778
Target:  5'- cCGGGACCcucGGGACCAUCuACcucCCACCa -3'
miRNA:   3'- aGCUCUGG---CUCUGGUGGuUGu--GGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1169 0.83 0.197199
Target:  5'- ----cGCCGGGACCACCAACACCGuCCa -3'
miRNA:   3'- agcucUGGCUCUGGUGGUUGUGGU-GG- -5'
29638 5' -54.4 NC_006151.1 + 1472 0.68 0.891493
Target:  5'- aCaAGACCaccuccaccccaGAGACCACCgccaagAugGCCGCCu -3'
miRNA:   3'- aGcUCUGG------------CUCUGGUGG------UugUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1661 0.77 0.44161
Target:  5'- -gGGGACCGGGACgAuCCucCGCCGCCg -3'
miRNA:   3'- agCUCUGGCUCUGgU-GGuuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1685 0.72 0.699655
Target:  5'- nCGAGcccuccGCCGcGGCCGCCGcCGCCGCUu -3'
miRNA:   3'- aGCUC------UGGCuCUGGUGGUuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1802 0.67 0.92216
Target:  5'- cCG-GGCCGGGGaggcaggCGCCGgggaggcaaGCGCCGCCg -3'
miRNA:   3'- aGCuCUGGCUCUg------GUGGU---------UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1849 0.78 0.380847
Target:  5'- -gGGGACCGAGGCCGCC---GCCGCg -3'
miRNA:   3'- agCUCUGGCUCUGGUGGuugUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 2109 0.73 0.659014
Target:  5'- gCGGGcCgCGGGGCCgGCCGuCGCCGCCg -3'
miRNA:   3'- aGCUCuG-GCUCUGG-UGGUuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 2174 0.68 0.877606
Target:  5'- cCGGGGCCG--GCC-CCGGCGCCcgagGCCc -3'
miRNA:   3'- aGCUCUGGCucUGGuGGUUGUGG----UGG- -5'
29638 5' -54.4 NC_006151.1 + 2398 0.71 0.777609
Target:  5'- cUCGGGGCCgcggagcucggcGAGGCC-CCGGCgGCCGCa -3'
miRNA:   3'- -AGCUCUGG------------CUCUGGuGGUUG-UGGUGg -5'
29638 5' -54.4 NC_006151.1 + 2616 0.71 0.767281
Target:  5'- gCGGGACCGGGGuCCGgggcCCGGCGCgggugcuCACCg -3'
miRNA:   3'- aGCUCUGGCUCU-GGU----GGUUGUG-------GUGG- -5'
29638 5' -54.4 NC_006151.1 + 2739 0.68 0.894162
Target:  5'- -aGcAGGCCGGGcCCAcgauggagcuagaguCCAGCACgGCCg -3'
miRNA:   3'- agC-UCUGGCUCuGGU---------------GGUUGUGgUGG- -5'
29638 5' -54.4 NC_006151.1 + 3423 0.66 0.951096
Target:  5'- cUCGccGGCCGGGACgCGgCGgaaGCCGCCg -3'
miRNA:   3'- -AGCu-CUGGCUCUG-GUgGUug-UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 3860 0.73 0.628274
Target:  5'- -gGAGGCCgGAGggggcgcccgccGCCGCCGGCGCCGgCg -3'
miRNA:   3'- agCUCUGG-CUC------------UGGUGGUUGUGGUgG- -5'
29638 5' -54.4 NC_006151.1 + 4843 0.67 0.937216
Target:  5'- -aGAGcCCcucgcggGAGuCC-CCGGCGCCGCCg -3'
miRNA:   3'- agCUCuGG-------CUCuGGuGGUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 5028 0.75 0.536998
Target:  5'- cCGGGGCCGGGGCCGggGAgGCCGCg -3'
miRNA:   3'- aGCUCUGGCUCUGGUggUUgUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 5071 0.69 0.86284
Target:  5'- -gGAGGCCGAgGGCCG-CGGgGCCGCg -3'
miRNA:   3'- agCUCUGGCU-CUGGUgGUUgUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 5230 0.7 0.822388
Target:  5'- -gGAGGCCGAGcGCCGCgCGGCGgCGgCg -3'
miRNA:   3'- agCUCUGGCUC-UGGUG-GUUGUgGUgG- -5'
29638 5' -54.4 NC_006151.1 + 5411 0.68 0.877606
Target:  5'- gCGAGGCCGAGuCCGuccucguccuucUCGGgGCCGCg -3'
miRNA:   3'- aGCUCUGGCUCuGGU------------GGUUgUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.