miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 5' -54.4 NC_006151.1 + 36105 0.89 0.086086
Target:  5'- cCGAGGCCGAGGCCGCCGuccuCGCgGCCg -3'
miRNA:   3'- aGCUCUGGCUCUGGUGGUu---GUGgUGG- -5'
29638 5' -54.4 NC_006151.1 + 125018 0.87 0.124526
Target:  5'- gCGAGGCCucgGAGGCCAUCGACGCCAUCu -3'
miRNA:   3'- aGCUCUGG---CUCUGGUGGUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 55445 0.86 0.141767
Target:  5'- aCGGGACCGGcGCCGCCGGCcCCGCCg -3'
miRNA:   3'- aGCUCUGGCUcUGGUGGUUGuGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 131770 0.84 0.18758
Target:  5'- gUCGcGACCGcGGCCGCgGGCGCCGCCg -3'
miRNA:   3'- -AGCuCUGGCuCUGGUGgUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1169 0.83 0.197199
Target:  5'- ----cGCCGGGACCACCAACACCGuCCa -3'
miRNA:   3'- agcucUGGCUCUGGUGGUUGUGGU-GG- -5'
29638 5' -54.4 NC_006151.1 + 912 0.82 0.245939
Target:  5'- aCGAcGAccacCCGGGACCACCAccaccaacaACACCACCa -3'
miRNA:   3'- aGCU-CU----GGCUCUGGUGGU---------UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 85164 0.81 0.251932
Target:  5'- -gGGGGCCGGcGCCGCgGGCGCCGCCg -3'
miRNA:   3'- agCUCUGGCUcUGGUGgUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 109705 0.8 0.290436
Target:  5'- -aGAGGCCGAGACC-CCGGCgACC-CCg -3'
miRNA:   3'- agCUCUGGCUCUGGuGGUUG-UGGuGG- -5'
29638 5' -54.4 NC_006151.1 + 46725 0.8 0.297285
Target:  5'- -gGGGGCCGGGGCCggcccggggucgGCgAACACCGCCg -3'
miRNA:   3'- agCUCUGGCUCUGG------------UGgUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 69299 0.8 0.318579
Target:  5'- -aGGGACaCG-GGCCGCCGGCGCCACa -3'
miRNA:   3'- agCUCUG-GCuCUGGUGGUUGUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 86173 0.79 0.325928
Target:  5'- gCGAGAUCGuGGCCGCCG-CGCUGCCc -3'
miRNA:   3'- aGCUCUGGCuCUGGUGGUuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 92182 0.79 0.333402
Target:  5'- cCGAcGGCgaCGGGGCCGCCGacGCGCCGCCg -3'
miRNA:   3'- aGCU-CUG--GCUCUGGUGGU--UGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 35939 0.79 0.340235
Target:  5'- aUCGAGACCGAGGgCaacuucaGCCAGCuccuggcgGCCGCCg -3'
miRNA:   3'- -AGCUCUGGCUCUgG-------UGGUUG--------UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 86957 0.79 0.348723
Target:  5'- aUCGucucGGCCGccauGGACCGCCGcCACCGCCg -3'
miRNA:   3'- -AGCu---CUGGC----UCUGGUGGUuGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 1849 0.78 0.380847
Target:  5'- -gGGGACCGAGGCCGCC---GCCGCg -3'
miRNA:   3'- agCUCUGGCUCUGGUGGuugUGGUGg -5'
29638 5' -54.4 NC_006151.1 + 33565 0.78 0.406202
Target:  5'- -gGAGACggaGAGACCGCCcGCccgGCCACCa -3'
miRNA:   3'- agCUCUGg--CUCUGGUGGuUG---UGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 52381 0.77 0.423685
Target:  5'- cCGGGGCCcgcgGGGGCgGCgGGCGCCGCCg -3'
miRNA:   3'- aGCUCUGG----CUCUGgUGgUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 22316 0.77 0.423685
Target:  5'- cCGAGcgucguCCG-GGCgACCAGCGCCGCCa -3'
miRNA:   3'- aGCUCu-----GGCuCUGgUGGUUGUGGUGG- -5'
29638 5' -54.4 NC_006151.1 + 36382 0.77 0.432593
Target:  5'- -aGAGGCCGGGGCCcCCGGCgGCC-CCg -3'
miRNA:   3'- agCUCUGGCUCUGGuGGUUG-UGGuGG- -5'
29638 5' -54.4 NC_006151.1 + 1661 0.77 0.44161
Target:  5'- -gGGGACCGGGACgAuCCucCGCCGCCg -3'
miRNA:   3'- agCUCUGGCUCUGgU-GGuuGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.