miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 73443 0.67 0.775108
Target:  5'- uUGGCGCggggcugCGUgagCUGCagguGCAGCCCgCCg -3'
miRNA:   3'- gACUGCG-------GCAa--GAUGgu--CGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 2166 0.67 0.766734
Target:  5'- -cGuccuCGCCGgg--GCCGGCcccggcgcccgaGGCCCCCg -3'
miRNA:   3'- gaCu---GCGGCaagaUGGUCG------------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 49264 0.67 0.766734
Target:  5'- gUGcGCGCCGUcgu-CCAGCGGCUCUg -3'
miRNA:   3'- gAC-UGCGGCAagauGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 76870 0.67 0.757318
Target:  5'- --cGCGCCGcc--GCCAGgAGCCCCa -3'
miRNA:   3'- gacUGCGGCaagaUGGUCgUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 60797 0.67 0.757318
Target:  5'- gUGcACGCUGggCUcGCCGcGCAGCUCCa -3'
miRNA:   3'- gAC-UGCGGCaaGA-UGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 8301 0.67 0.757318
Target:  5'- -gGGCGCCGcgUCccGCCccgAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-AGa-UGGucgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86818 0.67 0.756371
Target:  5'- -cGGCGCCcggcccaGUgcgGCCauGGCAGCCCCg -3'
miRNA:   3'- gaCUGCGG-------CAagaUGG--UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21024 0.67 0.756371
Target:  5'- gCUGACGCCGgc--GCCccugaagAGgAcGCCCCCg -3'
miRNA:   3'- -GACUGCGGCaagaUGG-------UCgU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 69469 0.67 0.747794
Target:  5'- -gGGCGCCGgcaccgUCgccGCCgccucgAGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-----AGa--UGG------UCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 92648 0.68 0.742031
Target:  5'- -cGACGCCGgcaaggcgcucgcccUgCUGCCGGCGGCCg-- -3'
miRNA:   3'- gaCUGCGGC---------------AaGAUGGUCGUCGGggg -5'
29639 3' -57.8 NC_006151.1 + 68279 0.68 0.738169
Target:  5'- -cGGCGCCGggCgccaCGGCGGCCaggcgcgcgCCCa -3'
miRNA:   3'- gaCUGCGGCaaGaug-GUCGUCGG---------GGG- -5'
29639 3' -57.8 NC_006151.1 + 136615 0.68 0.738169
Target:  5'- -gGACGCCGUcaacgUCacggACCccGCGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCA-----AGa---UGGu-CGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 135710 0.68 0.728455
Target:  5'- gCUGAUGCUGcUCacgGgCAGgAGCCCUCg -3'
miRNA:   3'- -GACUGCGGCaAGa--UgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 74559 0.68 0.728455
Target:  5'- cCUGGgGCUGgUUgcCCAGCGgGUCCCCg -3'
miRNA:   3'- -GACUgCGGCaAGauGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 61645 0.68 0.727478
Target:  5'- -cGGCGgCGUguggacgcGCCAGCcgcucguGGCCCCCg -3'
miRNA:   3'- gaCUGCgGCAaga-----UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 37625 0.68 0.727478
Target:  5'- --aGCGCUucaaccaGUUCUGCCAGCGccggguccacgcGCCCCa -3'
miRNA:   3'- gacUGCGG-------CAAGAUGGUCGU------------CGGGGg -5'
29639 3' -57.8 NC_006151.1 + 87612 0.68 0.718658
Target:  5'- -cGGcCGCCGUggcCUGCCAGCgcGGCgCCg -3'
miRNA:   3'- gaCU-GCGGCAa--GAUGGUCG--UCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 126432 0.68 0.718658
Target:  5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3'
miRNA:   3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 124543 0.68 0.718658
Target:  5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3'
miRNA:   3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 55900 0.68 0.718658
Target:  5'- --uGCGCCGggCgACCgAGCGGCUCCg -3'
miRNA:   3'- gacUGCGGCaaGaUGG-UCGUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.