miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 74867 0.66 0.803135
Target:  5'- -aGGCGCCGcgC-ACC-GCGGCCaCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGuCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 81219 0.66 0.803135
Target:  5'- -gGGCGCCGgcgCgugaacacgaaGCUGGC-GCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga----------UGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 12006 0.66 0.803135
Target:  5'- gUGGCGcCCGUcgUCUcucccGCCGGCGcaaCCCCg -3'
miRNA:   3'- gACUGC-GGCA--AGA-----UGGUCGUcg-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 70636 0.66 0.803135
Target:  5'- -cGGCGCCGUg--GCCGcGCgcgaGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCAagaUGGU-CG----UCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 94275 0.66 0.803135
Target:  5'- uUGGCGUCG-UCgcCCAGCGGCaggUCCg -3'
miRNA:   3'- gACUGCGGCaAGauGGUCGUCGg--GGG- -5'
29639 3' -57.8 NC_006151.1 + 53410 0.67 0.794242
Target:  5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3'
miRNA:   3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 102898 0.67 0.794242
Target:  5'- cCUG-CGCCGccucgUCgacucGCUGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCa----AGa----UGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 104727 0.67 0.794242
Target:  5'- -cGGCGCCGUgacCUACCuGgAGCgCUUCg -3'
miRNA:   3'- gaCUGCGGCAa--GAUGGuCgUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 111382 0.67 0.794242
Target:  5'- ---uCGCCGUcgUCgccgccGCCGGCA-CCCCCg -3'
miRNA:   3'- gacuGCGGCA--AGa-----UGGUCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 95096 0.67 0.794242
Target:  5'- aUGACGCCGUag----AGCAGCUCCUc -3'
miRNA:   3'- gACUGCGGCAagauggUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59301 0.67 0.793344
Target:  5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3'
miRNA:   3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 133646 0.67 0.788836
Target:  5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3'
miRNA:   3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 13742 0.67 0.785205
Target:  5'- -gGACGcCCGUcccgCggGCCGGaCcGCCCCCu -3'
miRNA:   3'- gaCUGC-GGCAa---Ga-UGGUC-GuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 39966 0.67 0.785205
Target:  5'- -gGGCGCCGUcgCcGCC-GCGGgCgCCCCg -3'
miRNA:   3'- gaCUGCGGCAa-GaUGGuCGUC-G-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 41521 0.67 0.785205
Target:  5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 139640 0.67 0.785205
Target:  5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 107024 0.67 0.776033
Target:  5'- -cGGCGCUGaUC-GCgGcGCGGCCCCUg -3'
miRNA:   3'- gaCUGCGGCaAGaUGgU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 118894 0.67 0.776033
Target:  5'- -cGACGCgGcc--GCCGGCGGCCUCg -3'
miRNA:   3'- gaCUGCGgCaagaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 72877 0.67 0.776033
Target:  5'- -cGGCGcCCGUgucggCgaugaGCCGcGcCAGCCCCCg -3'
miRNA:   3'- gaCUGC-GGCAa----Ga----UGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 39664 0.67 0.776033
Target:  5'- gCUGcCGCCGcgCgccuaccGCCAGCGcguGCuCCCCa -3'
miRNA:   3'- -GACuGCGGCaaGa------UGGUCGU---CG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.