Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 50840 | 0.66 | 0.828872 |
Target: 5'- -cGcCGCCGUcCccUCGGCGGCCgCCCu -3' miRNA: 3'- gaCuGCGGCAaGauGGUCGUCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 51658 | 0.66 | 0.828872 |
Target: 5'- gCUGAUGCCGUUgU-CCcGCucgGGCUCCUc -3' miRNA: 3'- -GACUGCGGCAAgAuGGuCG---UCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 95911 | 0.66 | 0.828872 |
Target: 5'- aUGAUGCCGc---GCguGCAGUCgCCCg -3' miRNA: 3'- gACUGCGGCaagaUGguCGUCGG-GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 90221 | 0.66 | 0.827203 |
Target: 5'- -gGACGCCGgccgagaucgcgUCgcgGCUGGcCAGCgCCCa -3' miRNA: 3'- gaCUGCGGCa-----------AGa--UGGUC-GUCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 137012 | 0.66 | 0.826366 |
Target: 5'- -cGGCGCUGggcgcccugcucggcCUGCCGGacgcguGCCCCCc -3' miRNA: 3'- gaCUGCGGCaa-------------GAUGGUCgu----CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 134390 | 0.66 | 0.823844 |
Target: 5'- -gGACGCCGgauacgacaucccCUGCCcGCGcgagcuggugcuGCCCCCc -3' miRNA: 3'- gaCUGCGGCaa-----------GAUGGuCGU------------CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 123856 | 0.66 | 0.823844 |
Target: 5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3' miRNA: 3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 91493 | 0.66 | 0.820458 |
Target: 5'- -cGcACGCUGgcgugC-ACCAGCAGCCCggCCu -3' miRNA: 3'- gaC-UGCGGCaa---GaUGGUCGUCGGG--GG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 24519 | 0.66 | 0.820458 |
Target: 5'- -gGGCGCCGccacgUUGCagcgcGCGGCCCCg -3' miRNA: 3'- gaCUGCGGCaa---GAUGgu---CGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 5730 | 0.66 | 0.820458 |
Target: 5'- gUGGCGCCGgggUCcgagGCCGcGCcGCCggCCCg -3' miRNA: 3'- gACUGCGGCa--AGa---UGGU-CGuCGG--GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 36811 | 0.66 | 0.820458 |
Target: 5'- -cGuCGCCGUcgagaccgUC-GCCcGCGGCCCCg -3' miRNA: 3'- gaCuGCGGCA--------AGaUGGuCGUCGGGGg -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 86297 | 0.66 | 0.817901 |
Target: 5'- -cGGCGUCGUcaaCUGCCcGCAGCUgggggccgugcucgCCCg -3' miRNA: 3'- gaCUGCGGCAa--GAUGGuCGUCGG--------------GGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 9066 | 0.66 | 0.811877 |
Target: 5'- -gGGCGCCG----GCCGGCcaucCCCCCa -3' miRNA: 3'- gaCUGCGGCaagaUGGUCGuc--GGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 50006 | 0.66 | 0.811877 |
Target: 5'- uUGcGCGCCGcgCgcgcgGCCcGCGcggcGCCCCCg -3' miRNA: 3'- gAC-UGCGGCaaGa----UGGuCGU----CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 57438 | 0.66 | 0.811877 |
Target: 5'- --cACGuCCG-UCg--CGGCGGCCCCCg -3' miRNA: 3'- gacUGC-GGCaAGaugGUCGUCGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 78779 | 0.66 | 0.811877 |
Target: 5'- cCUGAcCGCC-UUCggcgacucGCCcGCGGCCCuCCg -3' miRNA: 3'- -GACU-GCGGcAAGa-------UGGuCGUCGGG-GG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 106885 | 0.66 | 0.811877 |
Target: 5'- gUGACGCUGUgcgACCuGCGcGaCCCCg -3' miRNA: 3'- gACUGCGGCAagaUGGuCGU-CgGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 112710 | 0.66 | 0.811877 |
Target: 5'- -cGGCGCUGUgcgCcaagGCCcuGGCcuGCCCCCc -3' miRNA: 3'- gaCUGCGGCAa--Ga---UGG--UCGu-CGGGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 70636 | 0.66 | 0.803135 |
Target: 5'- -cGGCGCCGUg--GCCGcGCgcgaGGCgCCCg -3' miRNA: 3'- gaCUGCGGCAagaUGGU-CG----UCGgGGG- -5' |
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29639 | 3' | -57.8 | NC_006151.1 | + | 12006 | 0.66 | 0.803135 |
Target: 5'- gUGGCGcCCGUcgUCUcucccGCCGGCGcaaCCCCg -3' miRNA: 3'- gACUGC-GGCA--AGA-----UGGUCGUcg-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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