miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 86439 0.71 0.518454
Target:  5'- -cGGCGCCuggCgcCCGGCgaGGCCCCCg -3'
miRNA:   3'- gaCUGCGGcaaGauGGUCG--UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 52088 0.71 0.528188
Target:  5'- uCUGcaGCGCCG-UCgagagcagcgcGCCGcGCAGCCCCCc -3'
miRNA:   3'- -GAC--UGCGGCaAGa----------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109245 0.71 0.528188
Target:  5'- -aGcCGCCGcggUCUccGCUGGCGGCCCCg -3'
miRNA:   3'- gaCuGCGGCa--AGA--UGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 102676 0.71 0.528188
Target:  5'- uUGACGCCGUgg-ACgCGGgGGCgCCCg -3'
miRNA:   3'- gACUGCGGCAagaUG-GUCgUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 36382 0.71 0.528188
Target:  5'- -aGAgGCCGgggCccCCGGCGGCCCCg -3'
miRNA:   3'- gaCUgCGGCaa-GauGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 64616 0.71 0.528188
Target:  5'- -cGGCGCCGcgCcGCCGGCcgcggggcgcGGCgCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCG----------UCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 31342 0.71 0.535043
Target:  5'- -cGGCGCCGUgggcccgaccccggUCcgcGCCGGCA-CCCCCu -3'
miRNA:   3'- gaCUGCGGCA--------------AGa--UGGUCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 38386 0.71 0.53799
Target:  5'- -cGGCGCCGgcggCgGCgGGC-GCCCCCu -3'
miRNA:   3'- gaCUGCGGCaa--GaUGgUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 4126 0.71 0.557772
Target:  5'- cCUGcCGCCGcUCgGCCGGgcCGGCCCCg -3'
miRNA:   3'- -GACuGCGGCaAGaUGGUC--GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21970 0.71 0.567742
Target:  5'- -cGGCGUgGUgCggcGCCGGCAGCgCCCa -3'
miRNA:   3'- gaCUGCGgCAaGa--UGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 69929 0.71 0.571743
Target:  5'- -gGGCGCCGagC-GCCAGgggcagcgagacgaaCAGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUC---------------GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 87330 0.71 0.571743
Target:  5'- -cGGCGCUcccgGgcCUGCCgggccuccagggccuGGCGGCCCCCg -3'
miRNA:   3'- gaCUGCGG----CaaGAUGG---------------UCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 68338 0.7 0.577756
Target:  5'- uUGACGCgCGagUCggaGCgCAGCAGCCgCCa -3'
miRNA:   3'- gACUGCG-GCa-AGa--UG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 83241 0.7 0.577756
Target:  5'- -cGGCGCgCGcccccagUCgucgcGCCAGCGGCgCCCCg -3'
miRNA:   3'- gaCUGCG-GCa------AGa----UGGUCGUCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 101742 0.7 0.577756
Target:  5'- cCUGcCGCCGgac--CCGGCGGCCgCCg -3'
miRNA:   3'- -GACuGCGGCaagauGGUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 107530 0.7 0.577756
Target:  5'- ---cCGCCGUUggccCCGGCGGCCCCg -3'
miRNA:   3'- gacuGCGGCAAgau-GGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 86165 0.7 0.587808
Target:  5'- gCUGACGCgCGagaUCgugGCCGccgcGCuGCCCCCg -3'
miRNA:   3'- -GACUGCG-GCa--AGa--UGGU----CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 68850 0.7 0.587808
Target:  5'- -aGGCGCCGcgCgacgcguCCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGau-----GGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 107706 0.7 0.608001
Target:  5'- -cGcCGCCGgcaccaagGCCGccGCGGCCCCCa -3'
miRNA:   3'- gaCuGCGGCaaga----UGGU--CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 120443 0.7 0.618127
Target:  5'- -cGACGCUGUUCccCCgcGGCaAGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCAAGauGG--UCG-UCGG-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.