miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 119467 0.79 0.18588
Target:  5'- -gGACGCCGUgcgCUacgugGCCGGCAGCCUCg -3'
miRNA:   3'- gaCUGCGGCAa--GA-----UGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 86556 0.78 0.237317
Target:  5'- gUGGCGCCGUU---CCGGCAGCUCUCg -3'
miRNA:   3'- gACUGCGGCAAgauGGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 58707 0.77 0.261025
Target:  5'- --aGCGCCGggUCcGCCAGC-GCCCCCg -3'
miRNA:   3'- gacUGCGGCa-AGaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 125199 0.76 0.280045
Target:  5'- -cGGCGUCGUgg-GCCccGCGGCCCCCg -3'
miRNA:   3'- gaCUGCGGCAagaUGGu-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 15064 0.76 0.300151
Target:  5'- -cGGCGCC-UUCUGC--GCGGCCCCCu -3'
miRNA:   3'- gaCUGCGGcAAGAUGguCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 95382 0.75 0.336102
Target:  5'- -aGACGCCGUUCUcGCCGggcGUGGCCCgCu -3'
miRNA:   3'- gaCUGCGGCAAGA-UGGU---CGUCGGGgG- -5'
29639 3' -57.8 NC_006151.1 + 48635 0.75 0.351337
Target:  5'- uCUaACGCCGccaccgccgCUGCagCAGCAGCCCCCg -3'
miRNA:   3'- -GAcUGCGGCaa-------GAUG--GUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 105392 0.75 0.359136
Target:  5'- -cGACGCCG-UCUACCcGCGccuGCCCgCCa -3'
miRNA:   3'- gaCUGCGGCaAGAUGGuCGU---CGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 85839 0.74 0.382431
Target:  5'- gUGGCGCUGgagCUgcagaaccGCCAGCgcgugacGGCCCCCg -3'
miRNA:   3'- gACUGCGGCaa-GA--------UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 109464 0.74 0.391526
Target:  5'- -cGACGCCGgagCggcACgGGgAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCaa-Ga--UGgUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 123069 0.74 0.408419
Target:  5'- -cGACGCCGagC-GCCGGCGGCgCCUg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 125037 0.73 0.434594
Target:  5'- -cGACGCCa-UCUACCGGCGGCgCUa -3'
miRNA:   3'- gaCUGCGGcaAGAUGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 52355 0.73 0.434594
Target:  5'- -cGuCGUCGUcgUCcGCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCuGCGGCA--AGaUGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 82671 0.73 0.452574
Target:  5'- cCUGcggcGCGCCGcgggCgagGgCGGCGGCCCCCg -3'
miRNA:   3'- -GAC----UGCGGCaa--Ga--UgGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 86249 0.73 0.456218
Target:  5'- -cGGCGCCGUgcugGCCGuggucgacgacgaccGCGGCCCCUu -3'
miRNA:   3'- gaCUGCGGCAaga-UGGU---------------CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 62014 0.72 0.470951
Target:  5'- gUGcGCGCCGccCUGgCGGcCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaaGAUgGUC-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 24966 0.72 0.470951
Target:  5'- aUGcGCGCCGcggcCUGCCGcGuCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaa--GAUGGU-C-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 2340 0.72 0.480281
Target:  5'- -cGGCGUCGggCU-CCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGAuGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 100091 0.72 0.499205
Target:  5'- -aGGCGCCGgc--GCCGGCGccGCCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGU--CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 103189 0.72 0.499205
Target:  5'- -gGACGCCGccCUGgCGGCcGCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGAUgGUCGuCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.