miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 2166 0.67 0.766734
Target:  5'- -cGuccuCGCCGgg--GCCGGCcccggcgcccgaGGCCCCCg -3'
miRNA:   3'- gaCu---GCGGCaagaUGGUCG------------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 2340 0.72 0.480281
Target:  5'- -cGGCGUCGggCU-CCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGAuGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 3487 0.66 0.83711
Target:  5'- -gGGCGCCGga--GCCGGUcGUCCUCg -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 4126 0.71 0.557772
Target:  5'- cCUGcCGCCGcUCgGCCGGgcCGGCCCCg -3'
miRNA:   3'- -GACuGCGGCaAGaUGGUC--GUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 4691 0.66 0.845165
Target:  5'- -gGACaugGCC--UC-GCCGGCGGCCCCg -3'
miRNA:   3'- gaCUG---CGGcaAGaUGGUCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 4825 0.68 0.718658
Target:  5'- -gGACGUCGUccUCgucCCAG-AGCCCCUc -3'
miRNA:   3'- gaCUGCGGCA--AGau-GGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 5730 0.66 0.820458
Target:  5'- gUGGCGCCGgggUCcgagGCCGcGCcGCCggCCCg -3'
miRNA:   3'- gACUGCGGCa--AGa---UGGU-CGuCGG--GGG- -5'
29639 3' -57.8 NC_006151.1 + 8301 0.67 0.757318
Target:  5'- -gGGCGCCGcgUCccGCCccgAGCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-AGa-UGGucgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 9066 0.66 0.811877
Target:  5'- -gGGCGCCG----GCCGGCcaucCCCCCa -3'
miRNA:   3'- gaCUGCGGCaagaUGGUCGuc--GGGGG- -5'
29639 3' -57.8 NC_006151.1 + 12006 0.66 0.803135
Target:  5'- gUGGCGcCCGUcgUCUcucccGCCGGCGcaaCCCCg -3'
miRNA:   3'- gACUGC-GGCA--AGA-----UGGUCGUcg-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 13742 0.67 0.785205
Target:  5'- -gGACGcCCGUcccgCggGCCGGaCcGCCCCCu -3'
miRNA:   3'- gaCUGC-GGCAa---Ga-UGGUC-GuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 15064 0.76 0.300151
Target:  5'- -cGGCGCC-UUCUGC--GCGGCCCCCu -3'
miRNA:   3'- gaCUGCGGcAAGAUGguCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 17959 0.68 0.698855
Target:  5'- -cGGCGCCcgcCUGCCGGC-GUCCCa -3'
miRNA:   3'- gaCUGCGGcaaGAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 18717 0.66 0.834657
Target:  5'- gUGACGCCGUccacguagaucgcgUCgucGCCGccGCcggGGCCCCa -3'
miRNA:   3'- gACUGCGGCA--------------AGa--UGGU--CG---UCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21024 0.67 0.756371
Target:  5'- gCUGACGCCGgc--GCCccugaagAGgAcGCCCCCg -3'
miRNA:   3'- -GACUGCGGCaagaUGG-------UCgU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 21640 0.66 0.83711
Target:  5'- ----gGCCGUUCUugcgguACCAGUAGUUCaCCa -3'
miRNA:   3'- gacugCGGCAAGA------UGGUCGUCGGG-GG- -5'
29639 3' -57.8 NC_006151.1 + 21867 0.66 0.829704
Target:  5'- -aGGCGCCGguaCUggcccucguugaaccGCCccggagccaccaugAGCAGCCCCa -3'
miRNA:   3'- gaCUGCGGCaa-GA---------------UGG--------------UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 21970 0.71 0.567742
Target:  5'- -cGGCGUgGUgCggcGCCGGCAGCgCCCa -3'
miRNA:   3'- gaCUGCGgCAaGa--UGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 24519 0.66 0.820458
Target:  5'- -gGGCGCCGccacgUUGCagcgcGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCaa---GAUGgu---CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 24674 0.68 0.698855
Target:  5'- -cGGCGUCGcgCauguCCAGCGGCCcguCCCg -3'
miRNA:   3'- gaCUGCGGCaaGau--GGUCGUCGG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.