miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 139640 0.67 0.785205
Target:  5'- -cGGCGCCGgcgcgggggUCgcgGCgGGCGcGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCa--------AGa--UGgUCGU-CGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 139102 0.68 0.718658
Target:  5'- aUGGCGCUGUUCacgACCcucGGCGucacgcgcGCCCCg -3'
miRNA:   3'- gACUGCGGCAAGa--UGG---UCGU--------CGGGGg -5'
29639 3' -57.8 NC_006151.1 + 137768 0.68 0.698855
Target:  5'- cCUGGCGCgCGUgCU-CCAGCAGgCCg- -3'
miRNA:   3'- -GACUGCG-GCAaGAuGGUCGUCgGGgg -5'
29639 3' -57.8 NC_006151.1 + 137012 0.66 0.826366
Target:  5'- -cGGCGCUGggcgcccugcucggcCUGCCGGacgcguGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaa-------------GAUGGUCgu----CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 136615 0.68 0.738169
Target:  5'- -gGACGCCGUcaacgUCacggACCccGCGGCgCCCg -3'
miRNA:   3'- gaCUGCGGCA-----AGa---UGGu-CGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 136236 0.66 0.803135
Target:  5'- -aGACGCUGgugCUgGCCAcGC-GCCUCCa -3'
miRNA:   3'- gaCUGCGGCaa-GA-UGGU-CGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 135927 0.66 0.845165
Target:  5'- --uGCGCgCGcUCUGCCgcgGGgAGCCCCUc -3'
miRNA:   3'- gacUGCG-GCaAGAUGG---UCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 135710 0.68 0.728455
Target:  5'- gCUGAUGCUGcUCacgGgCAGgAGCCCUCg -3'
miRNA:   3'- -GACUGCGGCaAGa--UgGUCgUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 134390 0.66 0.823844
Target:  5'- -gGACGCCGgauacgacaucccCUGCCcGCGcgagcuggugcuGCCCCCc -3'
miRNA:   3'- gaCUGCGGCaa-----------GAUGGuCGU------------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 133646 0.67 0.788836
Target:  5'- -gGugGuCCGggugcgagaggcgCUGCCGGCGcggcggcgcGCCCCCg -3'
miRNA:   3'- gaCugC-GGCaa-----------GAUGGUCGU---------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 126432 0.68 0.718658
Target:  5'- -cGcCGCCGgcaCUACCAGC-GCCUCg -3'
miRNA:   3'- gaCuGCGGCaa-GAUGGUCGuCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 125199 0.76 0.280045
Target:  5'- -cGGCGUCGUgg-GCCccGCGGCCCCCg -3'
miRNA:   3'- gaCUGCGGCAagaUGGu-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 125037 0.73 0.434594
Target:  5'- -cGACGCCa-UCUACCGGCGGCgCUa -3'
miRNA:   3'- gaCUGCGGcaAGAUGGUCGUCGgGGg -5'
29639 3' -57.8 NC_006151.1 + 124543 0.68 0.718658
Target:  5'- -cGGCGCCGcgggcUUCUACCacacgGGCA-CCUCCg -3'
miRNA:   3'- gaCUGCGGC-----AAGAUGG-----UCGUcGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 123856 0.66 0.823844
Target:  5'- -gGGCGCCGUcgcgcuagcgCUGCUGcugcuggcgcucgccGCGGCCCCg -3'
miRNA:   3'- gaCUGCGGCAa---------GAUGGU---------------CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 123244 0.66 0.845165
Target:  5'- -cGGCGCgCGUUCUGCgAG--GCCgCCg -3'
miRNA:   3'- gaCUGCG-GCAAGAUGgUCguCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 123069 0.74 0.408419
Target:  5'- -cGACGCCGagC-GCCGGCGGCgCCUg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCGUCGgGGG- -5'
29639 3' -57.8 NC_006151.1 + 122970 0.66 0.830534
Target:  5'- -gGACGCCGgcgacgggggcgUCggcgacgaagacggGcCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCUGCGGCa-----------AGa-------------U-GGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 122074 0.66 0.83711
Target:  5'- -cGACGCCGagaacCUGCUcaAGCAGCUCa- -3'
miRNA:   3'- gaCUGCGGCaa---GAUGG--UCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 120443 0.7 0.618127
Target:  5'- -cGACGCUGUUCccCCgcGGCaAGCCgCCCg -3'
miRNA:   3'- gaCUGCGGCAAGauGG--UCG-UCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.