Results 21 - 40 of 148 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 24966 | 0.72 | 0.470951 |
Target: 5'- aUGcGCGCCGcggcCUGCCGcGuCAGCCCCCc -3' miRNA: 3'- gAC-UGCGGCaa--GAUGGU-C-GUCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 31342 | 0.71 | 0.535043 |
Target: 5'- -cGGCGCCGUgggcccgaccccggUCcgcGCCGGCA-CCCCCu -3' miRNA: 3'- gaCUGCGGCA--------------AGa--UGGUCGUcGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 33196 | 0.66 | 0.845165 |
Target: 5'- -gGAUgGCCG----GCCGGC-GCCCCCg -3' miRNA: 3'- gaCUG-CGGCaagaUGGUCGuCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 36382 | 0.71 | 0.528188 |
Target: 5'- -aGAgGCCGgggCccCCGGCGGCCCCg -3' miRNA: 3'- gaCUgCGGCaa-GauGGUCGUCGGGGg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 36811 | 0.66 | 0.820458 |
Target: 5'- -cGuCGCCGUcgagaccgUC-GCCcGCGGCCCCg -3' miRNA: 3'- gaCuGCGGCA--------AGaUGGuCGUCGGGGg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 37625 | 0.68 | 0.727478 |
Target: 5'- --aGCGCUucaaccaGUUCUGCCAGCGccggguccacgcGCCCCa -3' miRNA: 3'- gacUGCGG-------CAAGAUGGUCGU------------CGGGGg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 38386 | 0.71 | 0.53799 |
Target: 5'- -cGGCGCCGgcggCgGCgGGC-GCCCCCu -3' miRNA: 3'- gaCUGCGGCaa--GaUGgUCGuCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 39316 | 0.68 | 0.718658 |
Target: 5'- -cGGCGCCGUggaguaccUCUGCUcGCGGCUCg- -3' miRNA: 3'- gaCUGCGGCA--------AGAUGGuCGUCGGGgg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 39664 | 0.67 | 0.776033 |
Target: 5'- gCUGcCGCCGcgCgccuaccGCCAGCGcguGCuCCCCa -3' miRNA: 3'- -GACuGCGGCaaGa------UGGUCGU---CG-GGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 39966 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGUcgCcGCC-GCGGgCgCCCCg -3' miRNA: 3'- gaCUGCGGCAa-GaUGGuCGUC-G-GGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 40218 | 0.69 | 0.688867 |
Target: 5'- -gGACGCCGgcaacccCUACCuGCuGCUCCg -3' miRNA: 3'- gaCUGCGGCaa-----GAUGGuCGuCGGGGg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 41521 | 0.67 | 0.785205 |
Target: 5'- -gGGCGCCGcgg-AgCGGaAGCCCCCg -3' miRNA: 3'- gaCUGCGGCaagaUgGUCgUCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 46807 | 0.69 | 0.638404 |
Target: 5'- -cGGCGcCCGUcgcccUCUGCCucu-GCCCCCg -3' miRNA: 3'- gaCUGC-GGCA-----AGAUGGucguCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 48635 | 0.75 | 0.351337 |
Target: 5'- uCUaACGCCGccaccgccgCUGCagCAGCAGCCCCCg -3' miRNA: 3'- -GAcUGCGGCaa-------GAUG--GUCGUCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 48817 | 0.68 | 0.708788 |
Target: 5'- -gGACGCC-UUCgccGCCGaguucgacGUGGCCCCCu -3' miRNA: 3'- gaCUGCGGcAAGa--UGGU--------CGUCGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 49264 | 0.67 | 0.766734 |
Target: 5'- gUGcGCGCCGUcgu-CCAGCGGCUCUg -3' miRNA: 3'- gAC-UGCGGCAagauGGUCGUCGGGGg -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 50006 | 0.66 | 0.811877 |
Target: 5'- uUGcGCGCCGcgCgcgcgGCCcGCGcggcGCCCCCg -3' miRNA: 3'- gAC-UGCGGCaaGa----UGGuCGU----CGGGGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 50340 | 0.66 | 0.845165 |
Target: 5'- -cGGCGCCug---GCC-GCGGCCuCCCg -3' miRNA: 3'- gaCUGCGGcaagaUGGuCGUCGG-GGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 50840 | 0.66 | 0.828872 |
Target: 5'- -cGcCGCCGUcCccUCGGCGGCCgCCCu -3' miRNA: 3'- gaCuGCGGCAaGauGGUCGUCGG-GGG- -5' |
|||||||
29639 | 3' | -57.8 | NC_006151.1 | + | 50878 | 0.66 | 0.83711 |
Target: 5'- -gGACcCCGUccCgggGCCGGCcgcGCCCCCc -3' miRNA: 3'- gaCUGcGGCAa-Ga--UGGUCGu--CGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home