miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 3' -57.8 NC_006151.1 + 51658 0.66 0.828872
Target:  5'- gCUGAUGCCGUUgU-CCcGCucgGGCUCCUc -3'
miRNA:   3'- -GACUGCGGCAAgAuGGuCG---UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 52044 0.68 0.698855
Target:  5'- -cGGCGCCGUcgCgUGCguGUAGCCCa- -3'
miRNA:   3'- gaCUGCGGCAa-G-AUGguCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 52088 0.71 0.528188
Target:  5'- uCUGcaGCGCCG-UCgagagcagcgcGCCGcGCAGCCCCCc -3'
miRNA:   3'- -GAC--UGCGGCaAGa----------UGGU-CGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 52355 0.73 0.434594
Target:  5'- -cGuCGUCGUcgUCcGCCGGCGcGCCCCCg -3'
miRNA:   3'- gaCuGCGGCA--AGaUGGUCGU-CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 53410 0.67 0.794242
Target:  5'- -cGACgGCCGUg--AgCAGguGCCgCCCg -3'
miRNA:   3'- gaCUG-CGGCAagaUgGUCguCGG-GGG- -5'
29639 3' -57.8 NC_006151.1 + 55900 0.68 0.718658
Target:  5'- --uGCGCCGggCgACCgAGCGGCUCCg -3'
miRNA:   3'- gacUGCGGCaaGaUGG-UCGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 57438 0.66 0.811877
Target:  5'- --cACGuCCG-UCg--CGGCGGCCCCCg -3'
miRNA:   3'- gacUGC-GGCaAGaugGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 58707 0.77 0.261025
Target:  5'- --aGCGCCGggUCcGCCAGC-GCCCCCg -3'
miRNA:   3'- gacUGCGGCa-AGaUGGUCGuCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59301 0.67 0.793344
Target:  5'- gUGGCGCCcg-CgGCuCAGCGggcccgcGCCCCCg -3'
miRNA:   3'- gACUGCGGcaaGaUG-GUCGU-------CGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59486 0.7 0.618127
Target:  5'- -aGGCGCCc-UCgaagagcCCGGCGGCCUCCg -3'
miRNA:   3'- gaCUGCGGcaAGau-----GGUCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 59934 0.69 0.688867
Target:  5'- --cGCGCCGUcagCggcgGCUcGCAGCCCUCg -3'
miRNA:   3'- gacUGCGGCAa--Ga---UGGuCGUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 60797 0.67 0.757318
Target:  5'- gUGcACGCUGggCUcGCCGcGCAGCUCCa -3'
miRNA:   3'- gAC-UGCGGCaaGA-UGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 61645 0.68 0.727478
Target:  5'- -cGGCGgCGUguggacgcGCCAGCcgcucguGGCCCCCg -3'
miRNA:   3'- gaCUGCgGCAaga-----UGGUCG-------UCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 62014 0.72 0.470951
Target:  5'- gUGcGCGCCGccCUGgCGGcCAGCCCCCc -3'
miRNA:   3'- gAC-UGCGGCaaGAUgGUC-GUCGGGGG- -5'
29639 3' -57.8 NC_006151.1 + 63539 0.66 0.803135
Target:  5'- -aGACGCCGgcg-ACCAcGUAGCUCUg -3'
miRNA:   3'- gaCUGCGGCaagaUGGU-CGUCGGGGg -5'
29639 3' -57.8 NC_006151.1 + 64616 0.71 0.528188
Target:  5'- -cGGCGCCGcgCcGCCGGCcgcggggcgcGGCgCCCCg -3'
miRNA:   3'- gaCUGCGGCaaGaUGGUCG----------UCG-GGGG- -5'
29639 3' -57.8 NC_006151.1 + 67822 0.68 0.698855
Target:  5'- gCUGcCGCCGUcgUCgucgcggggGCuCAGCAGCCCg- -3'
miRNA:   3'- -GACuGCGGCA--AGa--------UG-GUCGUCGGGgg -5'
29639 3' -57.8 NC_006151.1 + 68279 0.68 0.738169
Target:  5'- -cGGCGCCGggCgccaCGGCGGCCaggcgcgcgCCCa -3'
miRNA:   3'- gaCUGCGGCaaGaug-GUCGUCGG---------GGG- -5'
29639 3' -57.8 NC_006151.1 + 68338 0.7 0.577756
Target:  5'- uUGACGCgCGagUCggaGCgCAGCAGCCgCCa -3'
miRNA:   3'- gACUGCG-GCa-AGa--UG-GUCGUCGGgGG- -5'
29639 3' -57.8 NC_006151.1 + 68850 0.7 0.587808
Target:  5'- -aGGCGCCGcgCgacgcguCCAGCAGCgCCg -3'
miRNA:   3'- gaCUGCGGCaaGau-----GGUCGUCGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.