miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29639 5' -49.6 NC_006151.1 + 120256 0.76 0.734485
Target:  5'- cGcGUGAGCUuCgaGGUGCUGCGGGAGCu -3'
miRNA:   3'- aC-CACUUGAuGa-CCAUGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 122176 0.75 0.775032
Target:  5'- cGGcGGGCUcgUGGUGCCGCcGGAGCu -3'
miRNA:   3'- aCCaCUUGAugACCAUGGCGuUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 125818 0.74 0.803038
Target:  5'- gGGUGAcccugaaccugacGCUGCUGGaggACCGCGAGuuccuGCc -3'
miRNA:   3'- aCCACU-------------UGAUGACCa--UGGCGUUCu----UG- -5'
29639 5' -49.6 NC_006151.1 + 18491 0.74 0.822424
Target:  5'- gUGcGUGGGCagGCUGGUguacACCGgCGAGAGCa -3'
miRNA:   3'- -AC-CACUUGa-UGACCA----UGGC-GUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 84681 0.72 0.880431
Target:  5'- aGGUGGACgagcaGCUGcgGCCGCuGGAGCg -3'
miRNA:   3'- aCCACUUGa----UGACcaUGGCGuUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 25278 0.71 0.920672
Target:  5'- uUGGUGuGugUGCUug-GCCGCGGGGACg -3'
miRNA:   3'- -ACCAC-UugAUGAccaUGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 116987 0.69 0.9699
Target:  5'- -cGUGAGgcGCUGGUGCCGCAGc--- -3'
miRNA:   3'- acCACUUgaUGACCAUGGCGUUcuug -5'
29639 5' -49.6 NC_006151.1 + 99515 0.69 0.972891
Target:  5'- gUGGUGcgccACUGCaUGGcGCCGCGcccgcccacGGAGCa -3'
miRNA:   3'- -ACCACu---UGAUG-ACCaUGGCGU---------UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 89741 0.68 0.978218
Target:  5'- gUGGUGGGCgagacgaGCUGGuUGCCGCGGc--- -3'
miRNA:   3'- -ACCACUUGa------UGACC-AUGGCGUUcuug -5'
29639 5' -49.6 NC_006151.1 + 23941 0.68 0.978218
Target:  5'- -cGUGGACgg--GGUGCCGUAgcAGAGCu -3'
miRNA:   3'- acCACUUGaugaCCAUGGCGU--UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 105027 0.68 0.980345
Target:  5'- cUGGUGAcgcaggcggcgcuGCUGCUcGGcGCCGuCGAGGAg -3'
miRNA:   3'- -ACCACU-------------UGAUGA-CCaUGGC-GUUCUUg -5'
29639 5' -49.6 NC_006151.1 + 77575 0.68 0.980571
Target:  5'- gUGGacgcccugGGGCUGCUGcUGCCGCugacGGAGCu -3'
miRNA:   3'- -ACCa-------CUUGAUGACcAUGGCGu---UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 134453 0.68 0.980571
Target:  5'- -cGUGAcGCUACcGGUgcACCGCAcGGACg -3'
miRNA:   3'- acCACU-UGAUGaCCA--UGGCGUuCUUG- -5'
29639 5' -49.6 NC_006151.1 + 44369 0.68 0.984702
Target:  5'- gGGgagaGggUUGCgacGGUcccGCCGCGGGGGCg -3'
miRNA:   3'- aCCa---CuuGAUGa--CCA---UGGCGUUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 92563 0.68 0.984702
Target:  5'- aGGUGGcCgagucGCUGGaggGCCGCGAGGu- -3'
miRNA:   3'- aCCACUuGa----UGACCa--UGGCGUUCUug -5'
29639 5' -49.6 NC_006151.1 + 21680 0.68 0.986498
Target:  5'- cGG-GGGCUGCUGGUagaACgGCGucaGGAAUc -3'
miRNA:   3'- aCCaCUUGAUGACCA---UGgCGU---UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 92479 0.68 0.986498
Target:  5'- gGGUGGACUACUcGGaguuccugGCCGCGuucguGCg -3'
miRNA:   3'- aCCACUUGAUGA-CCa-------UGGCGUucu--UG- -5'
29639 5' -49.6 NC_006151.1 + 119181 0.67 0.987971
Target:  5'- aGGUGGACgACgcgGGcGCCGCcgacgcgcgcaagGAGGGCg -3'
miRNA:   3'- aCCACUUGaUGa--CCaUGGCG-------------UUCUUG- -5'
29639 5' -49.6 NC_006151.1 + 126389 0.67 0.988127
Target:  5'- cGGgcccGcGCUGCUGGccaGCCGCGucGGGGCg -3'
miRNA:   3'- aCCa---CuUGAUGACCa--UGGCGU--UCUUG- -5'
29639 5' -49.6 NC_006151.1 + 91134 0.67 0.9896
Target:  5'- cGGcGAGCUuggccacCUGGgGgCGCGAGAGCg -3'
miRNA:   3'- aCCaCUUGAu------GACCaUgGCGUUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.