Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29639 | 5' | -49.6 | NC_006151.1 | + | 6085 | 0.67 | 0.990926 |
Target: 5'- cGGcgGGGCUGCUGcUGCUGCugggccgaagGAGGACg -3' miRNA: 3'- aCCa-CUUGAUGACcAUGGCG----------UUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 17115 | 0.67 | 0.992115 |
Target: 5'- cGG-GGGCUccgGCggcGGUGCUGCGGGAGg -3' miRNA: 3'- aCCaCUUGA---UGa--CCAUGGCGUUCUUg -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 18491 | 0.74 | 0.822424 |
Target: 5'- gUGcGUGGGCagGCUGGUguacACCGgCGAGAGCa -3' miRNA: 3'- -AC-CACUUGa-UGACCA----UGGC-GUUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 20129 | 0.67 | 0.993177 |
Target: 5'- gGGcUGGGggGCgGGcGCCGCGGGGGCg -3' miRNA: 3'- aCC-ACUUgaUGaCCaUGGCGUUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 21680 | 0.68 | 0.986498 |
Target: 5'- cGG-GGGCUGCUGGUagaACgGCGucaGGAAUc -3' miRNA: 3'- aCCaCUUGAUGACCA---UGgCGU---UCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 22717 | 0.67 | 0.991418 |
Target: 5'- uUGGUGGuCUcggucucgaccgagaGCUGGagGCCGCcgaGGGAGCg -3' miRNA: 3'- -ACCACUuGA---------------UGACCa-UGGCG---UUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 23941 | 0.68 | 0.978218 |
Target: 5'- -cGUGGACgg--GGUGCCGUAgcAGAGCu -3' miRNA: 3'- acCACUUGaugaCCAUGGCGU--UCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 25278 | 0.71 | 0.920672 |
Target: 5'- uUGGUGuGugUGCUug-GCCGCGGGGACg -3' miRNA: 3'- -ACCAC-UugAUGAccaUGGCGUUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 44369 | 0.68 | 0.984702 |
Target: 5'- gGGgagaGggUUGCgacGGUcccGCCGCGGGGGCg -3' miRNA: 3'- aCCa---CuuGAUGa--CCA---UGGCGUUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 47590 | 0.66 | 0.995695 |
Target: 5'- cGGUaAACUGCaguacgcGGcgGCCGCAGGAAa -3' miRNA: 3'- aCCAcUUGAUGa------CCa-UGGCGUUCUUg -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 77575 | 0.68 | 0.980571 |
Target: 5'- gUGGacgcccugGGGCUGCUGcUGCCGCugacGGAGCu -3' miRNA: 3'- -ACCa-------CUUGAUGACcAUGGCGu---UCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 82608 | 0.66 | 0.995695 |
Target: 5'- gGGUGGGCccgcGCgcgGGcGCCGCGGuGGGCg -3' miRNA: 3'- aCCACUUGa---UGa--CCaUGGCGUU-CUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 84681 | 0.72 | 0.880431 |
Target: 5'- aGGUGGACgagcaGCUGcgGCCGCuGGAGCg -3' miRNA: 3'- aCCACUUGa----UGACcaUGGCGuUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 85828 | 0.67 | 0.992115 |
Target: 5'- cGGUGcGC--CUGGUGgCGCuGGAGCu -3' miRNA: 3'- aCCACuUGauGACCAUgGCGuUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 89741 | 0.68 | 0.978218 |
Target: 5'- gUGGUGGGCgagacgaGCUGGuUGCCGCGGc--- -3' miRNA: 3'- -ACCACUUGa------UGACC-AUGGCGUUcuug -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 91134 | 0.67 | 0.9896 |
Target: 5'- cGGcGAGCUuggccacCUGGgGgCGCGAGAGCg -3' miRNA: 3'- aCCaCUUGAu------GACCaUgGCGUUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 92479 | 0.68 | 0.986498 |
Target: 5'- gGGUGGACUACUcGGaguuccugGCCGCGuucguGCg -3' miRNA: 3'- aCCACUUGAUGA-CCa-------UGGCGUucu--UG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 92563 | 0.68 | 0.984702 |
Target: 5'- aGGUGGcCgagucGCUGGaggGCCGCGAGGu- -3' miRNA: 3'- aCCACUuGa----UGACCa--UGGCGUUCUug -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 95693 | 0.67 | 0.990926 |
Target: 5'- aGGUGcc--GCUGGUAgCGCuggAAGAACa -3' miRNA: 3'- aCCACuugaUGACCAUgGCG---UUCUUG- -5' |
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29639 | 5' | -49.6 | NC_006151.1 | + | 99515 | 0.69 | 0.972891 |
Target: 5'- gUGGUGcgccACUGCaUGGcGCCGCGcccgcccacGGAGCa -3' miRNA: 3'- -ACCACu---UGAUG-ACCaUGGCGU---------UCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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