miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 109432 0.67 0.714055
Target:  5'- aCCGCCgGCcccaccaccUUCgCGGCcgGCCCcgacGCCGg -3'
miRNA:   3'- -GGCGGgCGu--------AAG-GCUGuaCGGG----CGGC- -5'
29640 3' -60 NC_006151.1 + 31612 0.67 0.704399
Target:  5'- gCCGCCUGgg--CgGGgAUGCCgCGCCGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUgUACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 65798 0.67 0.704399
Target:  5'- gCCGCCCGgcg-CgGACGUGCCgCGgUGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUGUACGG-GCgGC- -5'
29640 3' -60 NC_006151.1 + 68016 0.67 0.704399
Target:  5'- cUCGgCgGCGUccaggUCCaGGCG-GCCCGCCGg -3'
miRNA:   3'- -GGCgGgCGUA-----AGG-CUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 11300 0.67 0.704399
Target:  5'- cCCGCCCGCucUCCcg---GgCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaAGGcuguaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 50430 0.67 0.704399
Target:  5'- gCGCCCcuGCGcgCCGGCGgccuggGCaCCGCCc -3'
miRNA:   3'- gGCGGG--CGUaaGGCUGUa-----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 69460 0.67 0.704399
Target:  5'- gCGCgCCGCGggcgCCGGCAccGUcgCCGCCGc -3'
miRNA:   3'- gGCG-GGCGUaa--GGCUGUa-CG--GGCGGC- -5'
29640 3' -60 NC_006151.1 + 106378 0.67 0.704399
Target:  5'- gCGCCCGCcg--CGGC--GCCCGCUGc -3'
miRNA:   3'- gGCGGGCGuaagGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 95020 0.67 0.704399
Target:  5'- cCCGCgCGCGUagCGGCuGUGCUCgaaGCCGu -3'
miRNA:   3'- -GGCGgGCGUAagGCUG-UACGGG---CGGC- -5'
29640 3' -60 NC_006151.1 + 9179 0.67 0.694686
Target:  5'- aCCGCCCGCccucgcccccUCCGucuCAUGCCaC-CCGc -3'
miRNA:   3'- -GGCGGGCGua--------AGGCu--GUACGG-GcGGC- -5'
29640 3' -60 NC_006151.1 + 31759 0.67 0.694686
Target:  5'- gCGCCUGCGg--CGGCGggcGCgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaagGCUGUa--CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 36886 0.67 0.694686
Target:  5'- gCC-CCCGCAga--GACAgcCCCGCCGg -3'
miRNA:   3'- -GGcGGGCGUaaggCUGUacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 59234 0.67 0.694686
Target:  5'- uCUGCCgGCugcggCCGACGcGCaCGCCGa -3'
miRNA:   3'- -GGCGGgCGuaa--GGCUGUaCGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 86998 0.67 0.694686
Target:  5'- cUCGCCCGagccCCGGCcc-CCCGCCa -3'
miRNA:   3'- -GGCGGGCguaaGGCUGuacGGGCGGc -5'
29640 3' -60 NC_006151.1 + 99663 0.67 0.694686
Target:  5'- uCCGCgCGCAgagCCGcugggGCcUGCgCGCCGa -3'
miRNA:   3'- -GGCGgGCGUaa-GGC-----UGuACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 101850 0.67 0.694686
Target:  5'- cCCGCCCcgGCAc-CCGGCGgcgcaccgcuCCCGCCGc -3'
miRNA:   3'- -GGCGGG--CGUaaGGCUGUac--------GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 120875 0.67 0.694686
Target:  5'- cCUGCuCCGC--UCCGuCAUggccucgcGCCCGCUGg -3'
miRNA:   3'- -GGCG-GGCGuaAGGCuGUA--------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 139310 0.67 0.694686
Target:  5'- gCGCgUGCugcUCGAcCGUGCUCGCCGg -3'
miRNA:   3'- gGCGgGCGuaaGGCU-GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 129790 0.67 0.694686
Target:  5'- cCCGCCgGCGUgggCCcGCAUgagGCCCGUg- -3'
miRNA:   3'- -GGCGGgCGUAa--GGcUGUA---CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 53479 0.67 0.688834
Target:  5'- aCGCCgGCAgcgagCCGugGcacgcgaaggccaggUGCuCCGCCGc -3'
miRNA:   3'- gGCGGgCGUaa---GGCugU---------------ACG-GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.