miRNA display CGI


Results 41 - 60 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 37298 0.66 0.742599
Target:  5'- aCCuCUCGCucauggCCGACGggccCCCGCCGa -3'
miRNA:   3'- -GGcGGGCGuaa---GGCUGUac--GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 137258 0.66 0.742599
Target:  5'- uUCGCCuCGCGcgcCCGG--UGCCCGCgGg -3'
miRNA:   3'- -GGCGG-GCGUaa-GGCUguACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 140278 0.66 0.742599
Target:  5'- aCGCCCGUcgacgagcucGUgcgCCGGCGccGCCUGCgGg -3'
miRNA:   3'- gGCGGGCG----------UAa--GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 61413 0.66 0.742599
Target:  5'- aCGcCCCGCcgUCCucCucgGCCCcGCCGc -3'
miRNA:   3'- gGC-GGGCGuaAGGcuGua-CGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 87424 0.66 0.733163
Target:  5'- -gGCCCag---CCGGuggcCGUGCCCGCCGc -3'
miRNA:   3'- ggCGGGcguaaGGCU----GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 58133 0.66 0.733163
Target:  5'- gUCGCCCGCg--CCGuacgcggccGCGUGCCa-CCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGC---------UGUACGGgcGGC- -5'
29640 3' -60 NC_006151.1 + 91486 0.66 0.733163
Target:  5'- cUCGCCgCGCAcgCUGGCGUGCaCCagcaGCCc -3'
miRNA:   3'- -GGCGG-GCGUaaGGCUGUACG-GG----CGGc -5'
29640 3' -60 NC_006151.1 + 136442 0.66 0.733163
Target:  5'- gCCGCgCGCuacgUCGACgagcgcGUGCgCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaa-GGCUG------UACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 137021 0.66 0.733163
Target:  5'- gCGCCCuGCucggccugCCGgacGCGUGCCCcCCGg -3'
miRNA:   3'- gGCGGG-CGuaa-----GGC---UGUACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 106189 0.67 0.723646
Target:  5'- cCCG-CCGCuggagCCGGCGgugcgGCUCGCCc -3'
miRNA:   3'- -GGCgGGCGuaa--GGCUGUa----CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 58503 0.67 0.723646
Target:  5'- aUGCCCGCGcgCgGGCcgGCCuCGUCc -3'
miRNA:   3'- gGCGGGCGUaaGgCUGuaCGG-GCGGc -5'
29640 3' -60 NC_006151.1 + 35111 0.67 0.723646
Target:  5'- gCGCCCGCGcgagggauuUUCgGACAaucucauugGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGU---------AAGgCUGUa--------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 5599 0.67 0.723646
Target:  5'- aCGaCCGCGguccccUCCGGCGgaggggGCgCCGCCGc -3'
miRNA:   3'- gGCgGGCGUa-----AGGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 89457 0.67 0.723646
Target:  5'- aCGCCUGCA--CCaGCAggGCCCGCg- -3'
miRNA:   3'- gGCGGGCGUaaGGcUGUa-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 92664 0.67 0.719818
Target:  5'- cUCGCCCuGCug-CCGGCGgccggggacgcgcGCUCGCCGc -3'
miRNA:   3'- -GGCGGG-CGuaaGGCUGUa------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 108233 0.67 0.714055
Target:  5'- aCCGCCCGCcccUCCaccaccgucugcucaGACuacgcuccccagGCCCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGG---------------CUGua----------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 78161 0.67 0.714055
Target:  5'- cUCGgCCGCcgUggUCGAggcCGUGUCCGCCGu -3'
miRNA:   3'- -GGCgGGCGuaA--GGCU---GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 57454 0.67 0.714055
Target:  5'- gCC-CCCGCG--UCGGCcagGUGCCgCGCCGc -3'
miRNA:   3'- -GGcGGGCGUaaGGCUG---UACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 33577 0.67 0.714055
Target:  5'- aCCGCCCGC---CCGGCcaccaCCGUCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGuacg-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 57737 0.67 0.714055
Target:  5'- gCGCCCGCA---CGGCGcGCCgcaGCCGc -3'
miRNA:   3'- gGCGGGCGUaagGCUGUaCGGg--CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.