miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 38301 0.66 0.761191
Target:  5'- gCCGCCgCGCGgcCCGg---GCCCGCg- -3'
miRNA:   3'- -GGCGG-GCGUaaGGCuguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 87458 0.66 0.761191
Target:  5'- gCCGCCCcCGcUCCGGCuccagcagcgGCagCCGCCGc -3'
miRNA:   3'- -GGCGGGcGUaAGGCUGua--------CG--GGCGGC- -5'
29640 3' -60 NC_006151.1 + 101176 0.66 0.761191
Target:  5'- gCCGCCCuGacggCCGACGccguggacgcgUGCCUGCgCGa -3'
miRNA:   3'- -GGCGGG-CguaaGGCUGU-----------ACGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 7075 0.66 0.761191
Target:  5'- cCCGCgCGCc-UCUGauuuGCAUGCCCgGCCc -3'
miRNA:   3'- -GGCGgGCGuaAGGC----UGUACGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 107357 0.66 0.761191
Target:  5'- cCCgGCCCGCGgccCCGAUccccgggcUGCCCcCCGa -3'
miRNA:   3'- -GG-CGGGCGUaa-GGCUGu-------ACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 82519 0.66 0.761191
Target:  5'- gUGCCCGCGgaugCgCGuguCGUugagcgcccccaGCCCGCCGa -3'
miRNA:   3'- gGCGGGCGUaa--G-GCu--GUA------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 118723 0.66 0.751944
Target:  5'- gCCGCCUGCugcaCGGCuacgugcuggGCCCGgCGg -3'
miRNA:   3'- -GGCGGGCGuaagGCUGua--------CGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 122534 0.66 0.751944
Target:  5'- gCGCacgaCGUGUUCCGGCccGCCuCGCgGc -3'
miRNA:   3'- gGCGg---GCGUAAGGCUGuaCGG-GCGgC- -5'
29640 3' -60 NC_006151.1 + 23909 0.66 0.751944
Target:  5'- gUCGgUCGCGggcCCGACG-GgCCGCCGg -3'
miRNA:   3'- -GGCgGGCGUaa-GGCUGUaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 85151 0.66 0.751944
Target:  5'- aCCGCgUGCGgcagggggCCGGCGccgcggGCgCCGCCGc -3'
miRNA:   3'- -GGCGgGCGUaa------GGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 90807 0.66 0.751944
Target:  5'- gUCGCCCGCAccggCCG-CAggugGUCaCGCUGa -3'
miRNA:   3'- -GGCGGGCGUaa--GGCuGUa---CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 95221 0.66 0.751944
Target:  5'- gCUGCgCCGCAcgcccucgaCCGAgGcGCCCGUCGg -3'
miRNA:   3'- -GGCG-GGCGUaa-------GGCUgUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 122387 0.66 0.751944
Target:  5'- gCGCgCCGCGggcgcgcgCUGGCGgcGCUCGCCGc -3'
miRNA:   3'- gGCG-GGCGUaa------GGCUGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 137312 0.66 0.751944
Target:  5'- uCCGCCgCGCGgugCuCGACGcGCUCGCg- -3'
miRNA:   3'- -GGCGG-GCGUaa-G-GCUGUaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 90687 0.66 0.751944
Target:  5'- uCC-CCCGCGgcgggggcggCgGACGcGCCCGCCc -3'
miRNA:   3'- -GGcGGGCGUaa--------GgCUGUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 130181 0.66 0.751944
Target:  5'- gCCGCgaaGCGgacgUCCucGGgGUGCCCGCUGa -3'
miRNA:   3'- -GGCGgg-CGUa---AGG--CUgUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 108179 0.66 0.747283
Target:  5'- cCCGCCCGCccccccaccaccgUCUGcuCAgacuacgcuccccagGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGua-----------AGGCu-GUa--------------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 140278 0.66 0.742599
Target:  5'- aCGCCCGUcgacgagcucGUgcgCCGGCGccGCCUGCgGg -3'
miRNA:   3'- gGCGGGCG----------UAa--GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 137258 0.66 0.742599
Target:  5'- uUCGCCuCGCGcgcCCGG--UGCCCGCgGg -3'
miRNA:   3'- -GGCGG-GCGUaa-GGCUguACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 37298 0.66 0.742599
Target:  5'- aCCuCUCGCucauggCCGACGggccCCCGCCGa -3'
miRNA:   3'- -GGcGGGCGuaa---GGCUGUac--GGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.