miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 31939 0.73 0.355152
Target:  5'- aCCGggggguCCCGCGUgaugacgCCggggacgcggGACGUGCCCGCCGc -3'
miRNA:   3'- -GGC------GGGCGUAa------GG----------CUGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 11518 0.73 0.355152
Target:  5'- cCCGCCCGCGgcacUCCGg---GCCCGCg- -3'
miRNA:   3'- -GGCGGGCGUa---AGGCuguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 13466 0.73 0.370594
Target:  5'- cCCGuCCCGCGggCCGGaccGCCCcGCCGa -3'
miRNA:   3'- -GGC-GGGCGUaaGGCUguaCGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 37475 0.73 0.370594
Target:  5'- aCCGCgCCGCgg-CCGGgccCGUGCCCGUCu -3'
miRNA:   3'- -GGCG-GGCGuaaGGCU---GUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86069 0.73 0.378485
Target:  5'- -aGCCCGCAgucUCCGcGCGcGCgCCGCCGc -3'
miRNA:   3'- ggCGGGCGUa--AGGC-UGUaCG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 48586 0.73 0.378485
Target:  5'- gCCGCCCGgGgugcgccUCGuCGUGCCUGCCGc -3'
miRNA:   3'- -GGCGGGCgUaa-----GGCuGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 61447 0.73 0.378485
Target:  5'- cCCGCCCGCGUccgCCGcCAUGUgCggGCCGc -3'
miRNA:   3'- -GGCGGGCGUAa--GGCuGUACGgG--CGGC- -5'
29640 3' -60 NC_006151.1 + 104267 0.73 0.378485
Target:  5'- aCGCCgGCGcggCGGCggGCCCGCCGc -3'
miRNA:   3'- gGCGGgCGUaagGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 25455 0.72 0.392157
Target:  5'- gCCGCCCGCcccccccuggcgccaUCCGACAgacucGCgCCGCCu -3'
miRNA:   3'- -GGCGGGCGua-------------AGGCUGUa----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 11991 0.72 0.394602
Target:  5'- cCCGCgCCGCugUCUGugGcGCCCGUCGu -3'
miRNA:   3'- -GGCG-GGCGuaAGGCugUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 39154 0.72 0.394602
Target:  5'- cCCGCgCCGCGgcggccUCuCGGCGcUGCUCGCCGc -3'
miRNA:   3'- -GGCG-GGCGUa-----AG-GCUGU-ACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 128531 0.72 0.394602
Target:  5'- -aGCCCGaggccaCGGCggGCCCGCCGg -3'
miRNA:   3'- ggCGGGCguaag-GCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 87697 0.72 0.402825
Target:  5'- cCCGCCCGCc--CCGACGaccaauaaagauUGCCCGgUCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGU------------ACGGGC-GGC- -5'
29640 3' -60 NC_006151.1 + 64190 0.72 0.403654
Target:  5'- gCCGCCCGCGaucgccccgggcaggUCCGGCGUGggCGCCu -3'
miRNA:   3'- -GGCGGGCGUa--------------AGGCUGUACggGCGGc -5'
29640 3' -60 NC_006151.1 + 107573 0.72 0.411156
Target:  5'- -aGCCCGCGgagCUGACu--CCCGCCGc -3'
miRNA:   3'- ggCGGGCGUaa-GGCUGuacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 125104 0.72 0.411156
Target:  5'- cUCGCCCGCGggggcUUCGugGUggccuuccGCCCGCUGa -3'
miRNA:   3'- -GGCGGGCGUa----AGGCugUA--------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 17932 0.72 0.425561
Target:  5'- aCGCCCaucaggcagcggcgGCGUcUCCGGCGcccGCCUGCCGg -3'
miRNA:   3'- gGCGGG--------------CGUA-AGGCUGUa--CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 28562 0.72 0.428134
Target:  5'- gUGCCCGCGUcCCGGgA-GCCCGCa- -3'
miRNA:   3'- gGCGGGCGUAaGGCUgUaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 136051 0.71 0.444641
Target:  5'- gCGCCCGCGcaCCGGCAacGCCgaguacgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaaGGCUGUa-CGG-------GCGGC- -5'
29640 3' -60 NC_006151.1 + 112582 0.71 0.44552
Target:  5'- cUCGCCCGCGggcUUCGugGaGgCCGCCGc -3'
miRNA:   3'- -GGCGGGCGUa--AGGCugUaCgGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.