miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 114535 0.81 0.12265
Target:  5'- -aGaCCCGCGga-CGACGUGCCCGCCGu -3'
miRNA:   3'- ggC-GGGCGUaagGCUGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 38043 0.79 0.153521
Target:  5'- cCCGCCCGCGccCCGGCcgcccucggGCCCGCCu -3'
miRNA:   3'- -GGCGGGCGUaaGGCUGua-------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 15884 0.79 0.154663
Target:  5'- gCCGCCCGCcgggggacgcgcgccCCGACGcgGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaa------------GGCUGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 100498 0.78 0.191276
Target:  5'- gCGCCCGUGUUCCgGACGcUGUgCGCCGa -3'
miRNA:   3'- gGCGGGCGUAAGG-CUGU-ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 38020 0.77 0.195941
Target:  5'- cCUGCCCGC--UCCGGC-UGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaAGGCUGuACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 69340 0.77 0.20557
Target:  5'- gCCGCCCGCGagCgCGGCGUaGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGUaaG-GCUGUA-CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 11018 0.77 0.210537
Target:  5'- cCCGCCCGCucgcucgCCgGGCcgGCCgGCCGg -3'
miRNA:   3'- -GGCGGGCGuaa----GG-CUGuaCGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 138325 0.77 0.215606
Target:  5'- gCUGCCUGCGggcCCGGCAcgcgcgcaGCCCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa-GGCUGUa-------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 86184 0.76 0.236939
Target:  5'- gCCGCCgCGCugcccCCGGCggGCCCGCUGc -3'
miRNA:   3'- -GGCGG-GCGuaa--GGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 137673 0.76 0.254076
Target:  5'- gCGCCCGCcgUgCGGC-UGCCgCGCCa -3'
miRNA:   3'- gGCGGGCGuaAgGCUGuACGG-GCGGc -5'
29640 3' -60 NC_006151.1 + 14805 0.75 0.266058
Target:  5'- aCCGCCCGCcc-CCGACccaccgcGUCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGua-----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 43959 0.75 0.272219
Target:  5'- cCCGgCCGCc--CCGACccGCCCGCCu -3'
miRNA:   3'- -GGCgGGCGuaaGGCUGuaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 86230 0.75 0.278493
Target:  5'- aCCGCCCGCGcUgCGACAucggcgccgUGCUgGCCGu -3'
miRNA:   3'- -GGCGGGCGUaAgGCUGU---------ACGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 19377 0.75 0.291387
Target:  5'- -gGCCCGUGUcgUUgGGCGUgGCCCGCCGg -3'
miRNA:   3'- ggCGGGCGUA--AGgCUGUA-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 139264 0.74 0.304744
Target:  5'- aCGCCCGCGcgcUCCGACGgcggacGCgCCGCCc -3'
miRNA:   3'- gGCGGGCGUa--AGGCUGUa-----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 104394 0.74 0.304744
Target:  5'- -gGCCCGCAUcgCCGGCGgcgugcugGCCCGCg- -3'
miRNA:   3'- ggCGGGCGUAa-GGCUGUa-------CGGGCGgc -5'
29640 3' -60 NC_006151.1 + 100399 0.74 0.311596
Target:  5'- aCGCaCCGC--UCgGACAUGCgCGCCGa -3'
miRNA:   3'- gGCG-GGCGuaAGgCUGUACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 66034 0.74 0.32565
Target:  5'- uCCGCCCGCGUgaaCCGcCgGUGCCUGUCc -3'
miRNA:   3'- -GGCGGGCGUAa--GGCuG-UACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 9115 0.73 0.347603
Target:  5'- cCCGCCuCGCAcucgcCCGACAcucgGCCCGCgGc -3'
miRNA:   3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 67567 0.73 0.347603
Target:  5'- gCGCCCGCGggcgUCCa----GCCCGCCGa -3'
miRNA:   3'- gGCGGGCGUa---AGGcuguaCGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.