miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 493 0.68 0.665285
Target:  5'- cCCGCgCGCAacUUCCGccggACGUGa-CGCCGg -3'
miRNA:   3'- -GGCGgGCGU--AAGGC----UGUACggGCGGC- -5'
29640 3' -60 NC_006151.1 + 779 0.68 0.635659
Target:  5'- gCGCCaCGCGgucgCCGucguCAUcGuCCCGCCGg -3'
miRNA:   3'- gGCGG-GCGUaa--GGCu---GUA-C-GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 2960 0.66 0.779356
Target:  5'- gCGCCgGCGaagCCGAgGUcCCgCGCCGa -3'
miRNA:   3'- gGCGGgCGUaa-GGCUgUAcGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 4939 0.71 0.44552
Target:  5'- gCgGCCCGUcggUCGGCGgggGCCCGUCGg -3'
miRNA:   3'- -GgCGGGCGuaaGGCUGUa--CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 5544 0.69 0.586321
Target:  5'- gCCGCCuCGCGg--CGGCggGCUCGUCGa -3'
miRNA:   3'- -GGCGG-GCGUaagGCUGuaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 5599 0.67 0.723646
Target:  5'- aCGaCCGCGguccccUCCGGCGgaggggGCgCCGCCGc -3'
miRNA:   3'- gGCgGGCGUa-----AGGCUGUa-----CG-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 6747 0.71 0.481431
Target:  5'- cUCGCCCGCuuccucugCCGucugcuuuGCAUGCCCgGCCc -3'
miRNA:   3'- -GGCGGGCGuaa-----GGC--------UGUACGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 7075 0.66 0.761191
Target:  5'- cCCGCgCGCc-UCUGauuuGCAUGCCCgGCCc -3'
miRNA:   3'- -GGCGgGCGuaAGGC----UGUACGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 8883 0.67 0.684924
Target:  5'- uCCGCCCGacuUUCCGACucuccUCCGUCu -3'
miRNA:   3'- -GGCGGGCgu-AAGGCUGuac--GGGCGGc -5'
29640 3' -60 NC_006151.1 + 9007 0.67 0.675121
Target:  5'- aCCGCCC-CAcccUUCCcccgGACccccucccGCCCGCCGg -3'
miRNA:   3'- -GGCGGGcGU---AAGG----CUGua------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 9048 0.7 0.518689
Target:  5'- gCGcCCCGCGUgcUCCGGgGgcGCCgGCCGg -3'
miRNA:   3'- gGC-GGGCGUA--AGGCUgUa-CGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 9115 0.73 0.347603
Target:  5'- cCCGCCuCGCAcucgcCCGACAcucgGCCCGCgGc -3'
miRNA:   3'- -GGCGG-GCGUaa---GGCUGUa---CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 9179 0.67 0.694686
Target:  5'- aCCGCCCGCccucgcccccUCCGucuCAUGCCaC-CCGc -3'
miRNA:   3'- -GGCGGGCGua--------AGGCu--GUACGG-GcGGC- -5'
29640 3' -60 NC_006151.1 + 10624 0.71 0.459708
Target:  5'- gCGCCCGCGUgcgcucgugccggCgCGGCAUcCCCGCCc -3'
miRNA:   3'- gGCGGGCGUAa------------G-GCUGUAcGGGCGGc -5'
29640 3' -60 NC_006151.1 + 11018 0.77 0.210537
Target:  5'- cCCGCCCGCucgcucgCCgGGCcgGCCgGCCGg -3'
miRNA:   3'- -GGCGGGCGuaa----GG-CUGuaCGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 11300 0.67 0.704399
Target:  5'- cCCGCCCGCucUCCcg---GgCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaAGGcuguaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 11351 0.7 0.509261
Target:  5'- gCCGCCCGCGggcgcuaCCGcGCGcuccGCUCGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa-----GGC-UGUa---CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 11452 0.68 0.655425
Target:  5'- cCCGCCCGCGUgcccCCGGg--GCCaucgGCUGg -3'
miRNA:   3'- -GGCGGGCGUAa---GGCUguaCGGg---CGGC- -5'
29640 3' -60 NC_006151.1 + 11518 0.73 0.355152
Target:  5'- cCCGCCCGCGgcacUCCGg---GCCCGCg- -3'
miRNA:   3'- -GGCGGGCGUa---AGGCuguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 11660 0.69 0.586321
Target:  5'- aCCGCCCGCGUUUgcuaCGAUcccugcGCCCGaCGg -3'
miRNA:   3'- -GGCGGGCGUAAG----GCUGua----CGGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.