miRNA display CGI


Results 1 - 20 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 140418 0.67 0.675121
Target:  5'- cUCGCCCGUc--CCGcuggaggaguACGUGCCCGgCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGC----------UGUACGGGCgGC- -5'
29640 3' -60 NC_006151.1 + 140278 0.66 0.742599
Target:  5'- aCGCCCGUcgacgagcucGUgcgCCGGCGccGCCUGCgGg -3'
miRNA:   3'- gGCGGGCG----------UAa--GGCUGUa-CGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 139892 0.66 0.779356
Target:  5'- cCCGcCCCGUGUUCaaCGACGgcuuCCgCGCCGc -3'
miRNA:   3'- -GGC-GGGCGUAAG--GCUGUac--GG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 139310 0.67 0.694686
Target:  5'- gCGCgUGCugcUCGAcCGUGCUCGCCGg -3'
miRNA:   3'- gGCGgGCGuaaGGCU-GUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 139264 0.74 0.304744
Target:  5'- aCGCCCGCGcgcUCCGACGgcggacGCgCCGCCc -3'
miRNA:   3'- gGCGGGCGUa--AGGCUGUa-----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 138325 0.77 0.215606
Target:  5'- gCUGCCUGCGggcCCGGCAcgcgcgcaGCCCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaa-GGCUGUa-------CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 137673 0.76 0.254076
Target:  5'- gCGCCCGCcgUgCGGC-UGCCgCGCCa -3'
miRNA:   3'- gGCGGGCGuaAgGCUGuACGG-GCGGc -5'
29640 3' -60 NC_006151.1 + 137497 0.68 0.665285
Target:  5'- gCCGCCCuCg--CCGACuuuggcGCCgCGCCGg -3'
miRNA:   3'- -GGCGGGcGuaaGGCUGua----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 137312 0.66 0.751944
Target:  5'- uCCGCCgCGCGgugCuCGACGcGCUCGCg- -3'
miRNA:   3'- -GGCGG-GCGUaa-G-GCUGUaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 137258 0.66 0.742599
Target:  5'- uUCGCCuCGCGcgcCCGG--UGCCCGCgGg -3'
miRNA:   3'- -GGCGG-GCGUaa-GGCUguACGGGCGgC- -5'
29640 3' -60 NC_006151.1 + 137021 0.66 0.733163
Target:  5'- gCGCCCuGCucggccugCCGgacGCGUGCCCcCCGg -3'
miRNA:   3'- gGCGGG-CGuaa-----GGC---UGUACGGGcGGC- -5'
29640 3' -60 NC_006151.1 + 136964 0.7 0.509261
Target:  5'- gCCGCCUGCuggagCUGGCc-GCCgCGCCGg -3'
miRNA:   3'- -GGCGGGCGuaa--GGCUGuaCGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 136849 0.67 0.675121
Target:  5'- gCCGCCggccuCGCGcgCCG-CGUGaCCGCCGu -3'
miRNA:   3'- -GGCGG-----GCGUaaGGCuGUACgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 136810 0.68 0.615883
Target:  5'- gCGCUCGCgg-CCGACGcGCCgCGCgGg -3'
miRNA:   3'- gGCGGGCGuaaGGCUGUaCGG-GCGgC- -5'
29640 3' -60 NC_006151.1 + 136442 0.66 0.733163
Target:  5'- gCCGCgCGCuacgUCGACgagcgcGUGCgCGCCGa -3'
miRNA:   3'- -GGCGgGCGuaa-GGCUG------UACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 136051 0.71 0.444641
Target:  5'- gCGCCCGCGcaCCGGCAacGCCgaguacgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaaGGCUGUa-CGG-------GCGGC- -5'
29640 3' -60 NC_006151.1 + 135361 0.71 0.481431
Target:  5'- gCCGCCgCGCGUuggCCG-CGUGCgCCGCg- -3'
miRNA:   3'- -GGCGG-GCGUAa--GGCuGUACG-GGCGgc -5'
29640 3' -60 NC_006151.1 + 134936 0.68 0.621813
Target:  5'- cCCGCCCGCccucUCCGGCuacaucuugcagGCCUcgGCCa -3'
miRNA:   3'- -GGCGGGCGua--AGGCUGua----------CGGG--CGGc -5'
29640 3' -60 NC_006151.1 + 132831 0.69 0.566756
Target:  5'- gCCGCCCGCGggacggCCaccacgggcGGCcgGCCCgggGCCGc -3'
miRNA:   3'- -GGCGGGCGUaa----GG---------CUGuaCGGG---CGGC- -5'
29640 3' -60 NC_006151.1 + 130652 0.7 0.509261
Target:  5'- gCCGCCUGCGgcgugaaCGucaGUGCCCGCgGg -3'
miRNA:   3'- -GGCGGGCGUaag----GCug-UACGGGCGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.