miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 11991 0.72 0.394602
Target:  5'- cCCGCgCCGCugUCUGugGcGCCCGUCGu -3'
miRNA:   3'- -GGCG-GGCGuaAGGCugUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 12803 0.68 0.655425
Target:  5'- gCGCCCGCucccUCCG-CGUccccucucCCCGCCGc -3'
miRNA:   3'- gGCGGGCGua--AGGCuGUAc-------GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 13426 0.67 0.684924
Target:  5'- -gGCCCGCGUccCCGGg--GCCCGCa- -3'
miRNA:   3'- ggCGGGCGUAa-GGCUguaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 13466 0.73 0.370594
Target:  5'- cCCGuCCCGCGggCCGGaccGCCCcGCCGa -3'
miRNA:   3'- -GGC-GGGCGUaaGGCUguaCGGG-CGGC- -5'
29640 3' -60 NC_006151.1 + 14805 0.75 0.266058
Target:  5'- aCCGCCCGCcc-CCGACccaccgcGUCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGua-----CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 15884 0.79 0.154663
Target:  5'- gCCGCCCGCcgggggacgcgcgccCCGACGcgGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCGuaa------------GGCUGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 16889 0.7 0.518689
Target:  5'- gCGCUCGCG-UCCGuugcCGcGCCCGCCc -3'
miRNA:   3'- gGCGGGCGUaAGGCu---GUaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 17932 0.72 0.425561
Target:  5'- aCGCCCaucaggcagcggcgGCGUcUCCGGCGcccGCCUGCCGg -3'
miRNA:   3'- gGCGGG--------------CGUA-AGGCUGUa--CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 18433 0.68 0.625769
Target:  5'- gCCGCCgGCG----GGCGUcGCCCGCCu -3'
miRNA:   3'- -GGCGGgCGUaaggCUGUA-CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 18534 0.66 0.76211
Target:  5'- cCCGCCCGCGUcggcacccggaacggCCG-CGaGgCCGCCc -3'
miRNA:   3'- -GGCGGGCGUAa--------------GGCuGUaCgGGCGGc -5'
29640 3' -60 NC_006151.1 + 19014 0.68 0.615883
Target:  5'- gCCGCgCGCGcgCCGGCGaggugaagcUGCaCGCCGg -3'
miRNA:   3'- -GGCGgGCGUaaGGCUGU---------ACGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 19377 0.75 0.291387
Target:  5'- -gGCCCGUGUcgUUgGGCGUgGCCCGCCGg -3'
miRNA:   3'- ggCGGGCGUA--AGgCUGUA-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 21555 0.68 0.625769
Target:  5'- -gGCCUGgGccUCGGCGaGCCCGCCGa -3'
miRNA:   3'- ggCGGGCgUaaGGCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 23909 0.66 0.751944
Target:  5'- gUCGgUCGCGggcCCGACG-GgCCGCCGg -3'
miRNA:   3'- -GGCgGGCGUaa-GGCUGUaCgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 25455 0.72 0.392157
Target:  5'- gCCGCCCGCcccccccuggcgccaUCCGACAgacucGCgCCGCCu -3'
miRNA:   3'- -GGCGGGCGua-------------AGGCUGUa----CG-GGCGGc -5'
29640 3' -60 NC_006151.1 + 28562 0.72 0.428134
Target:  5'- gUGCCCGCGUcCCGGgA-GCCCGCa- -3'
miRNA:   3'- gGCGGGCGUAaGGCUgUaCGGGCGgc -5'
29640 3' -60 NC_006151.1 + 30916 0.7 0.547363
Target:  5'- gCGCCCGCGggcggcCCGcGCGgaucGCCCGCgCGg -3'
miRNA:   3'- gGCGGGCGUaa----GGC-UGUa---CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 31208 0.69 0.566756
Target:  5'- -gGCCCGCGUccaggCCGGgcccCcgGCCgGCCGg -3'
miRNA:   3'- ggCGGGCGUAa----GGCU----GuaCGGgCGGC- -5'
29640 3' -60 NC_006151.1 + 31612 0.67 0.704399
Target:  5'- gCCGCCUGgg--CgGGgAUGCCgCGCCGg -3'
miRNA:   3'- -GGCGGGCguaaGgCUgUACGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 31759 0.67 0.694686
Target:  5'- gCGCCUGCGg--CGGCGggcGCgCGCCGg -3'
miRNA:   3'- gGCGGGCGUaagGCUGUa--CGgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.