miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 3' -60 NC_006151.1 + 31939 0.73 0.355152
Target:  5'- aCCGggggguCCCGCGUgaugacgCCggggacgcggGACGUGCCCGCCGc -3'
miRNA:   3'- -GGC------GGGCGUAa------GG----------CUGUACGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 33577 0.67 0.714055
Target:  5'- aCCGCCCGC---CCGGCcaccaCCGUCGg -3'
miRNA:   3'- -GGCGGGCGuaaGGCUGuacg-GGCGGC- -5'
29640 3' -60 NC_006151.1 + 33776 0.67 0.684924
Target:  5'- cCCGCCCGCcccgUCCGACcgaccaUCCGUCc -3'
miRNA:   3'- -GGCGGGCGua--AGGCUGuac---GGGCGGc -5'
29640 3' -60 NC_006151.1 + 33911 0.66 0.742599
Target:  5'- gCGCcuCCGCG-UCCGGCGggcggaucgagGCCCGCgCGc -3'
miRNA:   3'- gGCG--GGCGUaAGGCUGUa----------CGGGCG-GC- -5'
29640 3' -60 NC_006151.1 + 34572 0.68 0.655425
Target:  5'- uCCGCUCGUcucUCCGACcgGCUggggCGCCc -3'
miRNA:   3'- -GGCGGGCGua-AGGCUGuaCGG----GCGGc -5'
29640 3' -60 NC_006151.1 + 35111 0.67 0.723646
Target:  5'- gCGCCCGCGcgagggauuUUCgGACAaucucauugGCgCGCCGc -3'
miRNA:   3'- gGCGGGCGU---------AAGgCUGUa--------CGgGCGGC- -5'
29640 3' -60 NC_006151.1 + 35227 0.69 0.596152
Target:  5'- -gGCCCGgGcgagCCGAgAUGgCCGCCGc -3'
miRNA:   3'- ggCGGGCgUaa--GGCUgUACgGGCGGC- -5'
29640 3' -60 NC_006151.1 + 35771 0.69 0.57652
Target:  5'- aCGCCCGacccaCCGAggcucUcgGCCCGCCa -3'
miRNA:   3'- gGCGGGCguaa-GGCU-----GuaCGGGCGGc -5'
29640 3' -60 NC_006151.1 + 35854 0.7 0.509261
Target:  5'- gCCGCCCGCucUCCGcGCucggcGCCCgGCCu -3'
miRNA:   3'- -GGCGGGCGuaAGGC-UGua---CGGG-CGGc -5'
29640 3' -60 NC_006151.1 + 36569 0.67 0.675121
Target:  5'- gUGgCCGCAgcgCCGGCAcggcggggGCCCGCUu -3'
miRNA:   3'- gGCgGGCGUaa-GGCUGUa-------CGGGCGGc -5'
29640 3' -60 NC_006151.1 + 36696 0.68 0.665285
Target:  5'- aCCGCgaGCcccugCuCGACGaGCCCGCCGc -3'
miRNA:   3'- -GGCGggCGuaa--G-GCUGUaCGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 36827 0.68 0.63467
Target:  5'- gUCGCCCGCGgcCCcgagaaggacgagGACGgacucgGCCuCGCCGg -3'
miRNA:   3'- -GGCGGGCGUaaGG-------------CUGUa-----CGG-GCGGC- -5'
29640 3' -60 NC_006151.1 + 36886 0.67 0.694686
Target:  5'- gCC-CCCGCAga--GACAgcCCCGCCGg -3'
miRNA:   3'- -GGcGGGCGUaaggCUGUacGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 37144 0.7 0.544472
Target:  5'- cUCGCCCGCgccgggccgccaccGUcUCCGcCGgcGCCCGCCGc -3'
miRNA:   3'- -GGCGGGCG--------------UA-AGGCuGUa-CGGGCGGC- -5'
29640 3' -60 NC_006151.1 + 37298 0.66 0.742599
Target:  5'- aCCuCUCGCucauggCCGACGggccCCCGCCGa -3'
miRNA:   3'- -GGcGGGCGuaa---GGCUGUac--GGGCGGC- -5'
29640 3' -60 NC_006151.1 + 37475 0.73 0.370594
Target:  5'- aCCGCgCCGCgg-CCGGgccCGUGCCCGUCu -3'
miRNA:   3'- -GGCG-GGCGuaaGGCU---GUACGGGCGGc -5'
29640 3' -60 NC_006151.1 + 37935 0.71 0.44552
Target:  5'- gCCGCCgCGCAgcCCGGCcgcGUGCCCcgcgaGCUGg -3'
miRNA:   3'- -GGCGG-GCGUaaGGCUG---UACGGG-----CGGC- -5'
29640 3' -60 NC_006151.1 + 37975 0.68 0.615883
Target:  5'- aCGCCUGCGUcCUGGCcUGCCgCGgCGu -3'
miRNA:   3'- gGCGGGCGUAaGGCUGuACGG-GCgGC- -5'
29640 3' -60 NC_006151.1 + 38020 0.77 0.195941
Target:  5'- cCUGCCCGC--UCCGGC-UGCCCGCg- -3'
miRNA:   3'- -GGCGGGCGuaAGGCUGuACGGGCGgc -5'
29640 3' -60 NC_006151.1 + 38043 0.79 0.153521
Target:  5'- cCCGCCCGCGccCCGGCcgcccucggGCCCGCCu -3'
miRNA:   3'- -GGCGGGCGUaaGGCUGua-------CGGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.