miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 68043 0.67 0.909543
Target:  5'- cGCCGGCGcggcGGGCACGggcUCGGCgaCGGg -3'
miRNA:   3'- -CGGCUGUa---CCUGUGCa--AGCUGggGUC- -5'
29640 5' -55 NC_006151.1 + 69732 0.68 0.876472
Target:  5'- cGUCGAUGUGGcccccCGCGgccgCGACCgCCGGg -3'
miRNA:   3'- -CGGCUGUACCu----GUGCaa--GCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 70496 0.67 0.921145
Target:  5'- cGCCG-CGUGGugGCGcacacCGACgCCAc -3'
miRNA:   3'- -CGGCuGUACCugUGCaa---GCUGgGGUc -5'
29640 5' -55 NC_006151.1 + 71218 0.7 0.794866
Target:  5'- uCCGugacCGUGGGCGCGcgcgcCGACCCCGu -3'
miRNA:   3'- cGGCu---GUACCUGUGCaa---GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 74379 0.68 0.886303
Target:  5'- cGCCGACGuugcgaaaguucaccUGGGCcaucUCGACCCaCAGg -3'
miRNA:   3'- -CGGCUGU---------------ACCUGugcaAGCUGGG-GUC- -5'
29640 5' -55 NC_006151.1 + 75446 0.72 0.678597
Target:  5'- uGCCGGCGUGGcGCGCGUagcggUCGGCggCCGGc -3'
miRNA:   3'- -CGGCUGUACC-UGUGCA-----AGCUGg-GGUC- -5'
29640 5' -55 NC_006151.1 + 77313 0.69 0.824653
Target:  5'- cGCCGcCAUGGaguuugaguaccagaGCACGaUCGugCaCCAGg -3'
miRNA:   3'- -CGGCuGUACC---------------UGUGCaAGCugG-GGUC- -5'
29640 5' -55 NC_006151.1 + 77623 0.68 0.861693
Target:  5'- gGCCGcGCGgagcUGGACGUGUaCGACCCCu- -3'
miRNA:   3'- -CGGC-UGU----ACCUGUGCAaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 77924 0.69 0.812614
Target:  5'- gGCCGugGUGGugAagggcgggCGcgCGGCCCCc- -3'
miRNA:   3'- -CGGCugUACCugU--------GCaaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 81773 0.66 0.92659
Target:  5'- cGCC-ACcgGGACGCGcUCGGCgcgCCCGu -3'
miRNA:   3'- -CGGcUGuaCCUGUGCaAGCUG---GGGUc -5'
29640 5' -55 NC_006151.1 + 82113 0.73 0.597029
Target:  5'- aGCCGAgCGUGuACACGUggaagCGGCCCgCGGg -3'
miRNA:   3'- -CGGCU-GUACcUGUGCAa----GCUGGG-GUC- -5'
29640 5' -55 NC_006151.1 + 82627 0.7 0.794866
Target:  5'- cGCCGcgGUGGGCGCGg--GACCCCc- -3'
miRNA:   3'- -CGGCugUACCUGUGCaagCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 84676 0.66 0.931796
Target:  5'- gGCCGAgGUGGACGagcaGcugCGGCCgCUGGa -3'
miRNA:   3'- -CGGCUgUACCUGUg---Caa-GCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 85772 0.7 0.794866
Target:  5'- cGCUGGCGcUGGACGCGcacUCGAUCCg-- -3'
miRNA:   3'- -CGGCUGU-ACCUGUGCa--AGCUGGGguc -5'
29640 5' -55 NC_006151.1 + 86261 0.66 0.945991
Target:  5'- gGCCGugGUcGACgACGaccgCGGCCCCu- -3'
miRNA:   3'- -CGGCugUAcCUG-UGCaa--GCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 87877 0.66 0.941496
Target:  5'- uUCGACGUGGggggggaacGCGCGgggcgucaCGGCCCCGc -3'
miRNA:   3'- cGGCUGUACC---------UGUGCaa------GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 93746 0.66 0.936764
Target:  5'- uGCgGGCcucgucgGGGCGCGgggCGucCCCCAGg -3'
miRNA:   3'- -CGgCUGua-----CCUGUGCaa-GCu-GGGGUC- -5'
29640 5' -55 NC_006151.1 + 96599 0.69 0.821247
Target:  5'- cGCCGGgCGcGGGCGCGccgacgUCGugCCCGa -3'
miRNA:   3'- -CGGCU-GUaCCUGUGCa-----AGCugGGGUc -5'
29640 5' -55 NC_006151.1 + 97484 0.66 0.941496
Target:  5'- cGCC-ACGUGGACGCGcagCG-CCUCGc -3'
miRNA:   3'- -CGGcUGUACCUGUGCaa-GCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 97996 0.68 0.853991
Target:  5'- gGgCGGCGUGGcCGCGUaggCGGCgCCGGc -3'
miRNA:   3'- -CgGCUGUACCuGUGCAa--GCUGgGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.