miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 36334 0.69 0.846088
Target:  5'- gGCCGGCuccGGGCccCGgccgcCGACCCCGGc -3'
miRNA:   3'- -CGGCUGua-CCUGu-GCaa---GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 36519 0.68 0.869189
Target:  5'- gGCCGGC---GGCGCGgccUCgGACCCCGGc -3'
miRNA:   3'- -CGGCUGuacCUGUGCa--AG-CUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 37845 0.67 0.921145
Target:  5'- cGCCGACAUGGccuacccgggccGCGCcgcgGACCCCc- -3'
miRNA:   3'- -CGGCUGUACC------------UGUGcaagCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 39031 0.67 0.897
Target:  5'- cGCCG-CcUGGAUGCGgcagauagcCGACCCCGa -3'
miRNA:   3'- -CGGCuGuACCUGUGCaa-------GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 39544 0.65 0.950253
Target:  5'- cGCCcGCGUGGAgGCcuccUUCGcccgccugcACCCCGGg -3'
miRNA:   3'- -CGGcUGUACCUgUGc---AAGC---------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 46948 0.67 0.903388
Target:  5'- cGCCGc---GGACugGggCGACCCUg- -3'
miRNA:   3'- -CGGCuguaCCUGugCaaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 49671 0.67 0.921145
Target:  5'- gGCCGcGCccggaGGACGCGgacgCGcCCCCGGa -3'
miRNA:   3'- -CGGC-UGua---CCUGUGCaa--GCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 49921 0.66 0.941033
Target:  5'- cGCCGGCGgcugacGGACACGauccgccgggaccUggccgCGGCCCUGGc -3'
miRNA:   3'- -CGGCUGUa-----CCUGUGC-------------Aa----GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 50372 0.66 0.92659
Target:  5'- cGCCGGCggGGGCgagACGcg-GGCCCCGc -3'
miRNA:   3'- -CGGCUGuaCCUG---UGCaagCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 56515 0.67 0.899583
Target:  5'- cCCGuCGUGGACGCccucuucgccgccggGUUCGgGCCCCu- -3'
miRNA:   3'- cGGCuGUACCUGUG---------------CAAGC-UGGGGuc -5'
29640 5' -55 NC_006151.1 + 57227 0.68 0.883539
Target:  5'- gGCCGucGCAgGcGGCGCGcgCGGCCUCGGc -3'
miRNA:   3'- -CGGC--UGUaC-CUGUGCaaGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 57538 0.68 0.890382
Target:  5'- gGCgCGGCcgcGGGCACG-UCGccgagcacGCCCCAGa -3'
miRNA:   3'- -CG-GCUGua-CCUGUGCaAGC--------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 58790 0.68 0.861693
Target:  5'- cGCCGucACGUGGACgaagcgcgccGCGUacgcgcCGGCCCCGu -3'
miRNA:   3'- -CGGC--UGUACCUG----------UGCAa-----GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 62490 0.66 0.92659
Target:  5'- cGCCaACGUGGACaaggcGCGgaCGACggCCCGGc -3'
miRNA:   3'- -CGGcUGUACCUG-----UGCaaGCUG--GGGUC- -5'
29640 5' -55 NC_006151.1 + 64215 0.66 0.936764
Target:  5'- uCCGGCGUGGGCGCc-UCGGCguaCAGg -3'
miRNA:   3'- cGGCUGUACCUGUGcaAGCUGgg-GUC- -5'
29640 5' -55 NC_006151.1 + 64340 0.68 0.883539
Target:  5'- cGUCGGCG-GGaaGCGCGggccgUCGGCCCCc- -3'
miRNA:   3'- -CGGCUGUaCC--UGUGCa----AGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 64627 0.68 0.869189
Target:  5'- cGCCGGCcgcgGGGCGCGg-CG-CCCCGc -3'
miRNA:   3'- -CGGCUGua--CCUGUGCaaGCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 65089 0.67 0.908938
Target:  5'- cCCG-CGUGGGC-CGgUCGcgcgcauGCCCCAGg -3'
miRNA:   3'- cGGCuGUACCUGuGCaAGC-------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 66864 0.67 0.921145
Target:  5'- gGCCGggGCGgcgcgaaGGGCGCGccCGGCCCCGc -3'
miRNA:   3'- -CGGC--UGUa------CCUGUGCaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 67868 0.69 0.829709
Target:  5'- cGCCGAgGUGG-CGCGcgCGccaGCCCgCGGg -3'
miRNA:   3'- -CGGCUgUACCuGUGCaaGC---UGGG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.