miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 136197 0.69 0.812614
Target:  5'- cGCCcuucugguACGUGG-CGCGcUUCGGCCCCGa -3'
miRNA:   3'- -CGGc-------UGUACCuGUGC-AAGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 77924 0.69 0.812614
Target:  5'- gGCCGugGUGGugAagggcgggCGcgCGGCCCCc- -3'
miRNA:   3'- -CGGCugUACCugU--------GCaaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 96599 0.69 0.821247
Target:  5'- cGCCGGgCGcGGGCGCGccgacgUCGugCCCGa -3'
miRNA:   3'- -CGGCU-GUaCCUGUGCa-----AGCugGGGUc -5'
29640 5' -55 NC_006151.1 + 77313 0.69 0.824653
Target:  5'- cGCCGcCAUGGaguuugaguaccagaGCACGaUCGugCaCCAGg -3'
miRNA:   3'- -CGGCuGUACC---------------UGUGCaAGCugG-GGUC- -5'
29640 5' -55 NC_006151.1 + 102442 0.69 0.829709
Target:  5'- aCCgGGCGcUGGACGCGcUCGAgUCCGGg -3'
miRNA:   3'- cGG-CUGU-ACCUGUGCaAGCUgGGGUC- -5'
29640 5' -55 NC_006151.1 + 67868 0.69 0.829709
Target:  5'- cGCCGAgGUGG-CGCGcgCGccaGCCCgCGGg -3'
miRNA:   3'- -CGGCUgUACCuGUGCaaGC---UGGG-GUC- -5'
29640 5' -55 NC_006151.1 + 15154 0.69 0.837992
Target:  5'- cGCCGACGUGacgggcGACACGcgCG-CCCUg- -3'
miRNA:   3'- -CGGCUGUAC------CUGUGCaaGCuGGGGuc -5'
29640 5' -55 NC_006151.1 + 137541 0.69 0.837992
Target:  5'- gGCgGACugGGACGCGggCGuCCCCGc -3'
miRNA:   3'- -CGgCUGuaCCUGUGCaaGCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 28373 0.69 0.846088
Target:  5'- cGCCaAUggGGGCACGUggGGCCCguGg -3'
miRNA:   3'- -CGGcUGuaCCUGUGCAagCUGGGguC- -5'
29640 5' -55 NC_006151.1 + 36334 0.69 0.846088
Target:  5'- gGCCGGCuccGGGCccCGgccgcCGACCCCGGc -3'
miRNA:   3'- -CGGCUGua-CCUGu-GCaa---GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 28933 0.68 0.853991
Target:  5'- cGCCa--AUGGGCACGUg-GGCCCgAGg -3'
miRNA:   3'- -CGGcugUACCUGUGCAagCUGGGgUC- -5'
29640 5' -55 NC_006151.1 + 97996 0.68 0.853991
Target:  5'- gGgCGGCGUGGcCGCGUaggCGGCgCCGGc -3'
miRNA:   3'- -CgGCUGUACCuGUGCAa--GCUGgGGUC- -5'
29640 5' -55 NC_006151.1 + 77623 0.68 0.861693
Target:  5'- gGCCGcGCGgagcUGGACGUGUaCGACCCCu- -3'
miRNA:   3'- -CGGC-UGU----ACCUGUGCAaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 58790 0.68 0.861693
Target:  5'- cGCCGucACGUGGACgaagcgcgccGCGUacgcgcCGGCCCCGu -3'
miRNA:   3'- -CGGC--UGUACCUG----------UGCAa-----GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 102359 0.68 0.869189
Target:  5'- gGCCGGCGacGACGCGUcCGcGCCCguGg -3'
miRNA:   3'- -CGGCUGUacCUGUGCAaGC-UGGGguC- -5'
29640 5' -55 NC_006151.1 + 36519 0.68 0.869189
Target:  5'- gGCCGGC---GGCGCGgccUCgGACCCCGGc -3'
miRNA:   3'- -CGGCUGuacCUGUGCa--AG-CUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 64627 0.68 0.869189
Target:  5'- cGCCGGCcgcgGGGCGCGg-CG-CCCCGc -3'
miRNA:   3'- -CGGCUGua--CCUGUGCaaGCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 69732 0.68 0.876472
Target:  5'- cGUCGAUGUGGcccccCGCGgccgCGACCgCCGGg -3'
miRNA:   3'- -CGGCUGUACCu----GUGCaa--GCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 28309 0.68 0.876472
Target:  5'- gGCCGGCGcguccccgGGGCGCccgcccccgggGUUCGAUCCCu- -3'
miRNA:   3'- -CGGCUGUa-------CCUGUG-----------CAAGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 64340 0.68 0.883539
Target:  5'- cGUCGGCG-GGaaGCGCGggccgUCGGCCCCc- -3'
miRNA:   3'- -CGGCUGUaCC--UGUGCa----AGCUGGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.