miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 99908 0.75 0.507297
Target:  5'- uGCUGACGUGGGCGCGcgacuaCGGCgCCGGc -3'
miRNA:   3'- -CGGCUGUACCUGUGCaa----GCUGgGGUC- -5'
29640 5' -55 NC_006151.1 + 82113 0.73 0.597029
Target:  5'- aGCCGAgCGUGuACACGUggaagCGGCCCgCGGg -3'
miRNA:   3'- -CGGCU-GUACcUGUGCAa----GCUGGG-GUC- -5'
29640 5' -55 NC_006151.1 + 138547 0.73 0.616397
Target:  5'- cGCCGGCcUGGGCGCGUacuacgcgaccgUCGcccgccuGCCCCAc -3'
miRNA:   3'- -CGGCUGuACCUGUGCA------------AGC-------UGGGGUc -5'
29640 5' -55 NC_006151.1 + 103162 0.73 0.617418
Target:  5'- cGCCGACcUGG-CGCGcUUCGACgCCAu -3'
miRNA:   3'- -CGGCUGuACCuGUGC-AAGCUGgGGUc -5'
29640 5' -55 NC_006151.1 + 129792 0.72 0.668446
Target:  5'- cGCCGGCGUGGGCcCGcaugaGGCCCguGa -3'
miRNA:   3'- -CGGCUGUACCUGuGCaag--CUGGGguC- -5'
29640 5' -55 NC_006151.1 + 75446 0.72 0.678597
Target:  5'- uGCCGGCGUGGcGCGCGUagcggUCGGCggCCGGc -3'
miRNA:   3'- -CGGCUGUACC-UGUGCA-----AGCUGg-GGUC- -5'
29640 5' -55 NC_006151.1 + 28242 0.71 0.737418
Target:  5'- gGCCGACGggcccauUGGccggggccucACACGUg-GGCCCCGGg -3'
miRNA:   3'- -CGGCUGU-------ACC----------UGUGCAagCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 22075 0.71 0.738392
Target:  5'- gGCC-ACGUGGGCGCGguacgUgGGCCgCCGGu -3'
miRNA:   3'- -CGGcUGUACCUGUGCa----AgCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 23422 0.71 0.742283
Target:  5'- cGCCGGcCGUGGGgGCGaugggugggagggUGGCCCCGGg -3'
miRNA:   3'- -CGGCU-GUACCUgUGCaa-----------GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 10279 0.7 0.755773
Target:  5'- cGCCGGCucccaggcggcGGGCACGUcccgCGuCCCCGGc -3'
miRNA:   3'- -CGGCUGua---------CCUGUGCAa---GCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 10905 0.7 0.757684
Target:  5'- uGCCGGCGcGGAC-CGgggUCGGgCCCAc -3'
miRNA:   3'- -CGGCUGUaCCUGuGCa--AGCUgGGGUc -5'
29640 5' -55 NC_006151.1 + 122416 0.7 0.767168
Target:  5'- cGCCGcCGUGGACGCcgccgaGGCCCgGGa -3'
miRNA:   3'- -CGGCuGUACCUGUGcaag--CUGGGgUC- -5'
29640 5' -55 NC_006151.1 + 3425 0.7 0.791244
Target:  5'- cGCCGGCcgGGACGCGgcggaagccgccgUCGGgCgCGGg -3'
miRNA:   3'- -CGGCUGuaCCUGUGCa------------AGCUgGgGUC- -5'
29640 5' -55 NC_006151.1 + 101187 0.7 0.794866
Target:  5'- gGCCGACgccGUGGACGCGUgccugcgCGAgggCCAGg -3'
miRNA:   3'- -CGGCUG---UACCUGUGCAa------GCUgg-GGUC- -5'
29640 5' -55 NC_006151.1 + 119433 0.7 0.794866
Target:  5'- -gCGACGcGGGCACGUUCGuggGCCgCGGc -3'
miRNA:   3'- cgGCUGUaCCUGUGCAAGC---UGGgGUC- -5'
29640 5' -55 NC_006151.1 + 85772 0.7 0.794866
Target:  5'- cGCUGGCGcUGGACGCGcacUCGAUCCg-- -3'
miRNA:   3'- -CGGCUGU-ACCUGUGCa--AGCUGGGguc -5'
29640 5' -55 NC_006151.1 + 82627 0.7 0.794866
Target:  5'- cGCCGcgGUGGGCGCGg--GACCCCc- -3'
miRNA:   3'- -CGGCugUACCUGUGCaagCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 104478 0.7 0.794866
Target:  5'- gGCgGACAUGGcGCACGU---GCCCCGc -3'
miRNA:   3'- -CGgCUGUACC-UGUGCAagcUGGGGUc -5'
29640 5' -55 NC_006151.1 + 71218 0.7 0.794866
Target:  5'- uCCGugacCGUGGGCGCGcgcgcCGACCCCGu -3'
miRNA:   3'- cGGCu---GUACCUGUGCaa---GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 117865 0.7 0.803817
Target:  5'- cGCCGACGU---CGCGUUCG-CCCCu- -3'
miRNA:   3'- -CGGCUGUAccuGUGCAAGCuGGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.