miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 2386 0.66 0.92659
Target:  5'- gGCCGGCAggcccucgGGGcCGCGgagcUCGgcgagGCCCCGGc -3'
miRNA:   3'- -CGGCUGUa-------CCU-GUGCa---AGC-----UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 3425 0.7 0.791244
Target:  5'- cGCCGGCcgGGACGCGgcggaagccgccgUCGGgCgCGGg -3'
miRNA:   3'- -CGGCUGuaCCUGUGCa------------AGCUgGgGUC- -5'
29640 5' -55 NC_006151.1 + 4216 0.65 0.950253
Target:  5'- gGgCGGCcgGGGCGCGggCGGgCgCGGg -3'
miRNA:   3'- -CgGCUGuaCCUGUGCaaGCUgGgGUC- -5'
29640 5' -55 NC_006151.1 + 4603 0.67 0.909543
Target:  5'- aGCCGugGccgugGGGCGCGUg-GACCCg-- -3'
miRNA:   3'- -CGGCugUa----CCUGUGCAagCUGGGguc -5'
29640 5' -55 NC_006151.1 + 4686 0.67 0.915462
Target:  5'- aGCCagGACAUGGccuCGCcggCGGCCCCGc -3'
miRNA:   3'- -CGG--CUGUACCu--GUGcaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 4867 0.67 0.909543
Target:  5'- cGCCGcCGUagcGGACGCGgccgUCGGCCggagggucggagCCGGg -3'
miRNA:   3'- -CGGCuGUA---CCUGUGCa---AGCUGG------------GGUC- -5'
29640 5' -55 NC_006151.1 + 6147 0.67 0.909543
Target:  5'- gGCCG-CGaGGACgGCGgccUCGGCCUCGGc -3'
miRNA:   3'- -CGGCuGUaCCUG-UGCa--AGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 10279 0.7 0.755773
Target:  5'- cGCCGGCucccaggcggcGGGCACGUcccgCGuCCCCGGc -3'
miRNA:   3'- -CGGCUGua---------CCUGUGCAa---GCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 10905 0.7 0.757684
Target:  5'- uGCCGGCGcGGAC-CGgggUCGGgCCCAc -3'
miRNA:   3'- -CGGCUGUaCCUGuGCa--AGCUgGGGUc -5'
29640 5' -55 NC_006151.1 + 14107 0.66 0.935299
Target:  5'- cGCCGACggGGaucgaccgggagagGCGCGgagCGcGCCCCGa -3'
miRNA:   3'- -CGGCUGuaCC--------------UGUGCaa-GC-UGGGGUc -5'
29640 5' -55 NC_006151.1 + 15154 0.69 0.837992
Target:  5'- cGCCGACGUGacgggcGACACGcgCG-CCCUg- -3'
miRNA:   3'- -CGGCUGUAC------CUGUGCaaGCuGGGGuc -5'
29640 5' -55 NC_006151.1 + 16915 0.67 0.915462
Target:  5'- cCCGGCGccGGcGCACG-UCG-CCCCGGg -3'
miRNA:   3'- cGGCUGUa-CC-UGUGCaAGCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 22075 0.71 0.738392
Target:  5'- gGCC-ACGUGGGCGCGguacgUgGGCCgCCGGu -3'
miRNA:   3'- -CGGcUGUACCUGUGCa----AgCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 23422 0.71 0.742283
Target:  5'- cGCCGGcCGUGGGgGCGaugggugggagggUGGCCCCGGg -3'
miRNA:   3'- -CGGCU-GUACCUgUGCaa-----------GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 28242 0.71 0.737418
Target:  5'- gGCCGACGggcccauUGGccggggccucACACGUg-GGCCCCGGg -3'
miRNA:   3'- -CGGCUGU-------ACC----------UGUGCAagCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 28309 0.68 0.876472
Target:  5'- gGCCGGCGcguccccgGGGCGCccgcccccgggGUUCGAUCCCu- -3'
miRNA:   3'- -CGGCUGUa-------CCUGUG-----------CAAGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 28373 0.69 0.846088
Target:  5'- cGCCaAUggGGGCACGUggGGCCCguGg -3'
miRNA:   3'- -CGGcUGuaCCUGUGCAagCUGGGguC- -5'
29640 5' -55 NC_006151.1 + 28933 0.68 0.853991
Target:  5'- cGCCa--AUGGGCACGUg-GGCCCgAGg -3'
miRNA:   3'- -CGGcugUACCUGUGCAagCUGGGgUC- -5'
29640 5' -55 NC_006151.1 + 31961 0.66 0.945991
Target:  5'- cGCCGg---GGACGCGggaCGugCCCGc -3'
miRNA:   3'- -CGGCuguaCCUGUGCaa-GCugGGGUc -5'
29640 5' -55 NC_006151.1 + 35986 0.67 0.903388
Target:  5'- gGCCGAgGaagaGGGCaucGCGUcCGGCCCCGa -3'
miRNA:   3'- -CGGCUgUa---CCUG---UGCAaGCUGGGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.