Results 1 - 20 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29640 | 5' | -55 | NC_006151.1 | + | 141702 | 0.66 | 0.931796 |
Target: 5'- gGCUGGCGgcGGACGCG---GugCCCGGg -3' miRNA: 3'- -CGGCUGUa-CCUGUGCaagCugGGGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 140461 | 0.66 | 0.936764 |
Target: 5'- gGCgGGauCAUGGACGCGcUgGACuCCCAc -3' miRNA: 3'- -CGgCU--GUACCUGUGCaAgCUG-GGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 138547 | 0.73 | 0.616397 |
Target: 5'- cGCCGGCcUGGGCGCGUacuacgcgaccgUCGcccgccuGCCCCAc -3' miRNA: 3'- -CGGCUGuACCUGUGCA------------AGC-------UGGGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 137744 | 0.65 | 0.950253 |
Target: 5'- gGCCGGCGccGACACGguccgCGGCCUg-- -3' miRNA: 3'- -CGGCUGUacCUGUGCaa---GCUGGGguc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 137601 | 0.66 | 0.936764 |
Target: 5'- gGUCGGgAUcggGGGCGCGggCGgggACCCCGGc -3' miRNA: 3'- -CGGCUgUA---CCUGUGCaaGC---UGGGGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 137541 | 0.69 | 0.837992 |
Target: 5'- gGCgGACugGGACGCGggCGuCCCCGc -3' miRNA: 3'- -CGgCUGuaCCUGUGCaaGCuGGGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 136197 | 0.69 | 0.812614 |
Target: 5'- cGCCcuucugguACGUGG-CGCGcUUCGGCCCCGa -3' miRNA: 3'- -CGGc-------UGUACCuGUGC-AAGCUGGGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 129792 | 0.72 | 0.668446 |
Target: 5'- cGCCGGCGUGGGCcCGcaugaGGCCCguGa -3' miRNA: 3'- -CGGCUGUACCUGuGCaag--CUGGGguC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 125196 | 0.66 | 0.931796 |
Target: 5'- cGCCGGCgucGUGGGC-CccgCGGCCCCc- -3' miRNA: 3'- -CGGCUG---UACCUGuGcaaGCUGGGGuc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 122507 | 0.66 | 0.924981 |
Target: 5'- cGCCGGCGcgcggacgcgcuccUGGACGCGcaCGACguguUCCGGc -3' miRNA: 3'- -CGGCUGU--------------ACCUGUGCaaGCUG----GGGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 122416 | 0.7 | 0.767168 |
Target: 5'- cGCCGcCGUGGACGCcgccgaGGCCCgGGa -3' miRNA: 3'- -CGGCuGUACCUGUGcaag--CUGGGgUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 122319 | 0.65 | 0.950253 |
Target: 5'- aGCUGGCGgu-GCGCGUg-GACCCCGa -3' miRNA: 3'- -CGGCUGUaccUGUGCAagCUGGGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 119433 | 0.7 | 0.794866 |
Target: 5'- -gCGACGcGGGCACGUUCGuggGCCgCGGc -3' miRNA: 3'- cgGCUGUaCCUGUGCAAGC---UGGgGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 118942 | 0.66 | 0.92659 |
Target: 5'- cGCCGACGcggcgcugucgcUGGAgGCGcUCGucGCCgCCGGc -3' miRNA: 3'- -CGGCUGU------------ACCUgUGCaAGC--UGG-GGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 117865 | 0.7 | 0.803817 |
Target: 5'- cGCCGACGU---CGCGUUCG-CCCCu- -3' miRNA: 3'- -CGGCUGUAccuGUGCAAGCuGGGGuc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 117322 | 0.66 | 0.945991 |
Target: 5'- cGCCGA---GGGCgGCG-UCGGCCUCGGc -3' miRNA: 3'- -CGGCUguaCCUG-UGCaAGCUGGGGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 110203 | 0.66 | 0.936764 |
Target: 5'- cGCCGccuGCggGaGACGCGgaCGACCCUcaAGg -3' miRNA: 3'- -CGGC---UGuaC-CUGUGCaaGCUGGGG--UC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 108765 | 0.66 | 0.93579 |
Target: 5'- aGCCGugGagaucaaccucgGGACAUcuccccgCGGCCCCAGu -3' miRNA: 3'- -CGGCugUa-----------CCUGUGcaa----GCUGGGGUC- -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 104478 | 0.7 | 0.794866 |
Target: 5'- gGCgGACAUGGcGCACGU---GCCCCGc -3' miRNA: 3'- -CGgCUGUACC-UGUGCAagcUGGGGUc -5' |
|||||||
29640 | 5' | -55 | NC_006151.1 | + | 104367 | 0.66 | 0.941496 |
Target: 5'- cGCCGACAcGGAgccgcucuCGCGgcUGGCCCgCAu -3' miRNA: 3'- -CGGCUGUaCCU--------GUGCaaGCUGGG-GUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home