miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 14107 0.66 0.935299
Target:  5'- cGCCGACggGGaucgaccgggagagGCGCGgagCGcGCCCCGa -3'
miRNA:   3'- -CGGCUGuaCC--------------UGUGCaa-GC-UGGGGUc -5'
29640 5' -55 NC_006151.1 + 98669 0.66 0.931796
Target:  5'- cGCCGACGacguccUGGcCGCGccccgcgUCGugcCCCCGGa -3'
miRNA:   3'- -CGGCUGU------ACCuGUGCa------AGCu--GGGGUC- -5'
29640 5' -55 NC_006151.1 + 84676 0.66 0.931796
Target:  5'- gGCCGAgGUGGACGagcaGcugCGGCCgCUGGa -3'
miRNA:   3'- -CGGCUgUACCUGUg---Caa-GCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 141702 0.66 0.931796
Target:  5'- gGCUGGCGgcGGACGCG---GugCCCGGg -3'
miRNA:   3'- -CGGCUGUa-CCUGUGCaagCugGGGUC- -5'
29640 5' -55 NC_006151.1 + 125196 0.66 0.931796
Target:  5'- cGCCGGCgucGUGGGC-CccgCGGCCCCc- -3'
miRNA:   3'- -CGGCUG---UACCUGuGcaaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 2386 0.66 0.92659
Target:  5'- gGCCGGCAggcccucgGGGcCGCGgagcUCGgcgagGCCCCGGc -3'
miRNA:   3'- -CGGCUGUa-------CCU-GUGCa---AGC-----UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 50372 0.66 0.92659
Target:  5'- cGCCGGCggGGGCgagACGcg-GGCCCCGc -3'
miRNA:   3'- -CGGCUGuaCCUG---UGCaagCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 62490 0.66 0.92659
Target:  5'- cGCCaACGUGGACaaggcGCGgaCGACggCCCGGc -3'
miRNA:   3'- -CGGcUGUACCUG-----UGCaaGCUG--GGGUC- -5'
29640 5' -55 NC_006151.1 + 81773 0.66 0.92659
Target:  5'- cGCC-ACcgGGACGCGcUCGGCgcgCCCGu -3'
miRNA:   3'- -CGGcUGuaCCUGUGCaAGCUG---GGGUc -5'
29640 5' -55 NC_006151.1 + 118942 0.66 0.92659
Target:  5'- cGCCGACGcggcgcugucgcUGGAgGCGcUCGucGCCgCCGGc -3'
miRNA:   3'- -CGGCUGU------------ACCUgUGCaAGC--UGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 122507 0.66 0.924981
Target:  5'- cGCCGGCGcgcggacgcgcuccUGGACGCGcaCGACguguUCCGGc -3'
miRNA:   3'- -CGGCUGU--------------ACCUGUGCaaGCUG----GGGUC- -5'
29640 5' -55 NC_006151.1 + 102086 0.67 0.922804
Target:  5'- cGCCGACgagcucgaggagcacGUGGuCGCGUgcgCGGgccggagccuguuCCCCGGg -3'
miRNA:   3'- -CGGCUG---------------UACCuGUGCAa--GCU-------------GGGGUC- -5'
29640 5' -55 NC_006151.1 + 66864 0.67 0.921145
Target:  5'- gGCCGggGCGgcgcgaaGGGCGCGccCGGCCCCGc -3'
miRNA:   3'- -CGGC--UGUa------CCUGUGCaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 70496 0.67 0.921145
Target:  5'- cGCCG-CGUGGugGCGcacacCGACgCCAc -3'
miRNA:   3'- -CGGCuGUACCugUGCaa---GCUGgGGUc -5'
29640 5' -55 NC_006151.1 + 49671 0.67 0.921145
Target:  5'- gGCCGcGCccggaGGACGCGgacgCGcCCCCGGa -3'
miRNA:   3'- -CGGC-UGua---CCUGUGCaa--GCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 37845 0.67 0.921145
Target:  5'- cGCCGACAUGGccuacccgggccGCGCcgcgGACCCCc- -3'
miRNA:   3'- -CGGCUGUACC------------UGUGcaagCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 16915 0.67 0.915462
Target:  5'- cCCGGCGccGGcGCACG-UCG-CCCCGGg -3'
miRNA:   3'- cGGCUGUa-CC-UGUGCaAGCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 4686 0.67 0.915462
Target:  5'- aGCCagGACAUGGccuCGCcggCGGCCCCGc -3'
miRNA:   3'- -CGG--CUGUACCu--GUGcaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 4867 0.67 0.909543
Target:  5'- cGCCGcCGUagcGGACGCGgccgUCGGCCggagggucggagCCGGg -3'
miRNA:   3'- -CGGCuGUA---CCUGUGCa---AGCUGG------------GGUC- -5'
29640 5' -55 NC_006151.1 + 68043 0.67 0.909543
Target:  5'- cGCCGGCGcggcGGGCACGggcUCGGCgaCGGg -3'
miRNA:   3'- -CGGCUGUa---CCUGUGCa--AGCUGggGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.