miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 4867 0.67 0.909543
Target:  5'- cGCCGcCGUagcGGACGCGgccgUCGGCCggagggucggagCCGGg -3'
miRNA:   3'- -CGGCuGUA---CCUGUGCa---AGCUGG------------GGUC- -5'
29640 5' -55 NC_006151.1 + 6147 0.67 0.909543
Target:  5'- gGCCG-CGaGGACgGCGgccUCGGCCUCGGc -3'
miRNA:   3'- -CGGCuGUaCCUG-UGCa--AGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 65089 0.67 0.908938
Target:  5'- cCCG-CGUGGGC-CGgUCGcgcgcauGCCCCAGg -3'
miRNA:   3'- cGGCuGUACCUGuGCaAGC-------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 35986 0.67 0.903388
Target:  5'- gGCCGAgGaagaGGGCaucGCGUcCGGCCCCGa -3'
miRNA:   3'- -CGGCUgUa---CCUG---UGCAaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 46948 0.67 0.903388
Target:  5'- cGCCGc---GGACugGggCGACCCUg- -3'
miRNA:   3'- -CGGCuguaCCUGugCaaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 56515 0.67 0.899583
Target:  5'- cCCGuCGUGGACGCccucuucgccgccggGUUCGgGCCCCu- -3'
miRNA:   3'- cGGCuGUACCUGUG---------------CAAGC-UGGGGuc -5'
29640 5' -55 NC_006151.1 + 39031 0.67 0.897
Target:  5'- cGCCG-CcUGGAUGCGgcagauagcCGACCCCGa -3'
miRNA:   3'- -CGGCuGuACCUGUGCaa-------GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 57538 0.68 0.890382
Target:  5'- gGCgCGGCcgcGGGCACG-UCGccgagcacGCCCCAGa -3'
miRNA:   3'- -CG-GCUGua-CCUGUGCaAGC--------UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 74379 0.68 0.886303
Target:  5'- cGCCGACGuugcgaaaguucaccUGGGCcaucUCGACCCaCAGg -3'
miRNA:   3'- -CGGCUGU---------------ACCUGugcaAGCUGGG-GUC- -5'
29640 5' -55 NC_006151.1 + 64340 0.68 0.883539
Target:  5'- cGUCGGCG-GGaaGCGCGggccgUCGGCCCCc- -3'
miRNA:   3'- -CGGCUGUaCC--UGUGCa----AGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 57227 0.68 0.883539
Target:  5'- gGCCGucGCAgGcGGCGCGcgCGGCCUCGGc -3'
miRNA:   3'- -CGGC--UGUaC-CUGUGCaaGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 69732 0.68 0.876472
Target:  5'- cGUCGAUGUGGcccccCGCGgccgCGACCgCCGGg -3'
miRNA:   3'- -CGGCUGUACCu----GUGCaa--GCUGG-GGUC- -5'
29640 5' -55 NC_006151.1 + 28309 0.68 0.876472
Target:  5'- gGCCGGCGcguccccgGGGCGCccgcccccgggGUUCGAUCCCu- -3'
miRNA:   3'- -CGGCUGUa-------CCUGUG-----------CAAGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 64627 0.68 0.869189
Target:  5'- cGCCGGCcgcgGGGCGCGg-CG-CCCCGc -3'
miRNA:   3'- -CGGCUGua--CCUGUGCaaGCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 36519 0.68 0.869189
Target:  5'- gGCCGGC---GGCGCGgccUCgGACCCCGGc -3'
miRNA:   3'- -CGGCUGuacCUGUGCa--AG-CUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 102359 0.68 0.869189
Target:  5'- gGCCGGCGacGACGCGUcCGcGCCCguGg -3'
miRNA:   3'- -CGGCUGUacCUGUGCAaGC-UGGGguC- -5'
29640 5' -55 NC_006151.1 + 58790 0.68 0.861693
Target:  5'- cGCCGucACGUGGACgaagcgcgccGCGUacgcgcCGGCCCCGu -3'
miRNA:   3'- -CGGC--UGUACCUG----------UGCAa-----GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 77623 0.68 0.861693
Target:  5'- gGCCGcGCGgagcUGGACGUGUaCGACCCCu- -3'
miRNA:   3'- -CGGC-UGU----ACCUGUGCAaGCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 97996 0.68 0.853991
Target:  5'- gGgCGGCGUGGcCGCGUaggCGGCgCCGGc -3'
miRNA:   3'- -CgGCUGUACCuGUGCAa--GCUGgGGUC- -5'
29640 5' -55 NC_006151.1 + 28933 0.68 0.853991
Target:  5'- cGCCa--AUGGGCACGUg-GGCCCgAGg -3'
miRNA:   3'- -CGGcugUACCUGUGCAagCUGGGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.