miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29640 5' -55 NC_006151.1 + 99723 0.66 0.945991
Target:  5'- cGCCGACGagcGcGGCGCucgUCGACCUCGc -3'
miRNA:   3'- -CGGCUGUa--C-CUGUGca-AGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 103627 0.66 0.945991
Target:  5'- cGCCGACGcGGugGCGg-CGGCgCUGGc -3'
miRNA:   3'- -CGGCUGUaCCugUGCaaGCUGgGGUC- -5'
29640 5' -55 NC_006151.1 + 86261 0.66 0.945991
Target:  5'- gGCCGugGUcGACgACGaccgCGGCCCCu- -3'
miRNA:   3'- -CGGCugUAcCUG-UGCaa--GCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 31961 0.66 0.945991
Target:  5'- cGCCGg---GGACGCGggaCGugCCCGc -3'
miRNA:   3'- -CGGCuguaCCUGUGCaa-GCugGGGUc -5'
29640 5' -55 NC_006151.1 + 104367 0.66 0.941496
Target:  5'- cGCCGACAcGGAgccgcucuCGCGgcUGGCCCgCAu -3'
miRNA:   3'- -CGGCUGUaCCU--------GUGCaaGCUGGG-GUc -5'
29640 5' -55 NC_006151.1 + 97484 0.66 0.941496
Target:  5'- cGCC-ACGUGGACGCGcagCG-CCUCGc -3'
miRNA:   3'- -CGGcUGUACCUGUGCaa-GCuGGGGUc -5'
29640 5' -55 NC_006151.1 + 137601 0.66 0.936764
Target:  5'- gGUCGGgAUcggGGGCGCGggCGgggACCCCGGc -3'
miRNA:   3'- -CGGCUgUA---CCUGUGCaaGC---UGGGGUC- -5'
29640 5' -55 NC_006151.1 + 140461 0.66 0.936764
Target:  5'- gGCgGGauCAUGGACGCGcUgGACuCCCAc -3'
miRNA:   3'- -CGgCU--GUACCUGUGCaAgCUG-GGGUc -5'
29640 5' -55 NC_006151.1 + 110203 0.66 0.936764
Target:  5'- cGCCGccuGCggGaGACGCGgaCGACCCUcaAGg -3'
miRNA:   3'- -CGGC---UGuaC-CUGUGCaaGCUGGGG--UC- -5'
29640 5' -55 NC_006151.1 + 49921 0.66 0.941033
Target:  5'- cGCCGGCGgcugacGGACACGauccgccgggaccUggccgCGGCCCUGGc -3'
miRNA:   3'- -CGGCUGUa-----CCUGUGC-------------Aa----GCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 87877 0.66 0.941496
Target:  5'- uUCGACGUGGggggggaacGCGCGgggcgucaCGGCCCCGc -3'
miRNA:   3'- cGGCUGUACC---------UGUGCaa------GCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 4867 0.67 0.909543
Target:  5'- cGCCGcCGUagcGGACGCGgccgUCGGCCggagggucggagCCGGg -3'
miRNA:   3'- -CGGCuGUA---CCUGUGCa---AGCUGG------------GGUC- -5'
29640 5' -55 NC_006151.1 + 6147 0.67 0.909543
Target:  5'- gGCCG-CGaGGACgGCGgccUCGGCCUCGGc -3'
miRNA:   3'- -CGGCuGUaCCUG-UGCa--AGCUGGGGUC- -5'
29640 5' -55 NC_006151.1 + 4686 0.67 0.915462
Target:  5'- aGCCagGACAUGGccuCGCcggCGGCCCCGc -3'
miRNA:   3'- -CGG--CUGUACCu--GUGcaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 16915 0.67 0.915462
Target:  5'- cCCGGCGccGGcGCACG-UCG-CCCCGGg -3'
miRNA:   3'- cGGCUGUa-CC-UGUGCaAGCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 37845 0.67 0.921145
Target:  5'- cGCCGACAUGGccuacccgggccGCGCcgcgGACCCCc- -3'
miRNA:   3'- -CGGCUGUACC------------UGUGcaagCUGGGGuc -5'
29640 5' -55 NC_006151.1 + 49671 0.67 0.921145
Target:  5'- gGCCGcGCccggaGGACGCGgacgCGcCCCCGGa -3'
miRNA:   3'- -CGGC-UGua---CCUGUGCaa--GCuGGGGUC- -5'
29640 5' -55 NC_006151.1 + 70496 0.67 0.921145
Target:  5'- cGCCG-CGUGGugGCGcacacCGACgCCAc -3'
miRNA:   3'- -CGGCuGUACCugUGCaa---GCUGgGGUc -5'
29640 5' -55 NC_006151.1 + 66864 0.67 0.921145
Target:  5'- gGCCGggGCGgcgcgaaGGGCGCGccCGGCCCCGc -3'
miRNA:   3'- -CGGC--UGUa------CCUGUGCaaGCUGGGGUc -5'
29640 5' -55 NC_006151.1 + 68043 0.67 0.909543
Target:  5'- cGCCGGCGcggcGGGCACGggcUCGGCgaCGGg -3'
miRNA:   3'- -CGGCUGUa---CCUGUGCa--AGCUGggGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.