miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 94922 0.66 0.98392
Target:  5'- gCGUUgUACA-CGCCGugcuCCGcgaugcGGACGCGCa -3'
miRNA:   3'- -GCAAgAUGUaGUGGU----GGC------UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 95953 0.67 0.974319
Target:  5'- --cUCUGCAgcgagagcccgaCGCCGCCGcGGCGCAg -3'
miRNA:   3'- gcaAGAUGUa-----------GUGGUGGCuCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 96204 0.66 0.979076
Target:  5'- gGggCgccGCGUCGCCguggcggcggccgcGgCGAGGCGCACa -3'
miRNA:   3'- gCaaGa--UGUAGUGG--------------UgGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97191 0.66 0.981931
Target:  5'- aCGcgCU-CGaCGgUGCCGAGGCGCACg -3'
miRNA:   3'- -GCaaGAuGUaGUgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97467 0.68 0.962534
Target:  5'- uCGggCagGCGgcUCACCGCCacguGGACGCGCa -3'
miRNA:   3'- -GCaaGa-UGU--AGUGGUGGc---UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97557 0.78 0.503053
Target:  5'- cCGU----CGUCGCCGCCGAGGCGCAg -3'
miRNA:   3'- -GCAagauGUAGUGGUGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 97608 0.69 0.937066
Target:  5'- gCGggC-ACGUgCACCugCGAGcgGCGCGCg -3'
miRNA:   3'- -GCaaGaUGUA-GUGGugGCUC--UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97915 0.75 0.689962
Target:  5'- gCGga-UGcCGUCGCCGCCGAGGcCGCGCc -3'
miRNA:   3'- -GCaagAU-GUAGUGGUGGCUCU-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 98326 0.69 0.931954
Target:  5'- aGUUCUuCAUgGCCGCgggccgCGAGACGCccGCg -3'
miRNA:   3'- gCAAGAuGUAgUGGUG------GCUCUGCG--UG- -5'
29641 3' -51.8 NC_006151.1 + 100693 0.71 0.882009
Target:  5'- aCGcUCcGCGagACCuggACCGAGGCGCGCg -3'
miRNA:   3'- -GCaAGaUGUagUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 103044 0.66 0.985739
Target:  5'- gGUUC-GCG-CugCugGCCGAGGCGCAg -3'
miRNA:   3'- gCAAGaUGUaGugG--UGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 103693 0.67 0.974854
Target:  5'- gGUgCUGCG-CGCCGCCGuGGaGCACc -3'
miRNA:   3'- gCAaGAUGUaGUGGUGGCuCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 104164 0.75 0.669072
Target:  5'- gCGgagCUGCGcccCGCCGCCGAGcGCGCGCu -3'
miRNA:   3'- -GCaa-GAUGUa--GUGGUGGCUC-UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 104648 0.66 0.981931
Target:  5'- aCGUgc-GCGcgGCCGCCGAcgcGGCGCGCg -3'
miRNA:   3'- -GCAagaUGUagUGGUGGCU---CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 105097 0.66 0.9889
Target:  5'- aGUggCUGCAccaggcgcggcUCAUCAUCGAcACGCACc -3'
miRNA:   3'- gCAa-GAUGU-----------AGUGGUGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 106736 0.72 0.833791
Target:  5'- aCGUUCaccgucACGggcUCGCCGCCGAgcagcgcGACGCGCg -3'
miRNA:   3'- -GCAAGa-----UGU---AGUGGUGGCU-------CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 112228 0.7 0.9026
Target:  5'- gCGcUCgcuCGUCGCCGCCGccAGGCGCuGCg -3'
miRNA:   3'- -GCaAGau-GUAGUGGUGGC--UCUGCG-UG- -5'
29641 3' -51.8 NC_006151.1 + 113278 0.67 0.96913
Target:  5'- -----cGCAaCACCGCCGcGGCGUACg -3'
miRNA:   3'- gcaagaUGUaGUGGUGGCuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 113654 0.69 0.937066
Target:  5'- aCGcgCUGCGcaaggcgcagaUCGCCGCCGAGAacCGCu- -3'
miRNA:   3'- -GCaaGAUGU-----------AGUGGUGGCUCU--GCGug -5'
29641 3' -51.8 NC_006151.1 + 114132 0.66 0.987396
Target:  5'- ----gUGCGcCGCCGCCGAGcCGCGg -3'
miRNA:   3'- gcaagAUGUaGUGGUGGCUCuGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.