miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 67324 0.67 0.972098
Target:  5'- aGggCgagaACAUCACCGucaccuuccCCGAcGGCGCGCg -3'
miRNA:   3'- gCaaGa---UGUAGUGGU---------GGCU-CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 68855 0.66 0.987396
Target:  5'- cCGcgCgacGCGUCcagcAgCGCCGGGGCGCGCc -3'
miRNA:   3'- -GCaaGa--UGUAG----UgGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 70897 0.66 0.98392
Target:  5'- gCGcgCUGCGUCgugcGCUGCCu-GGCGCGCg -3'
miRNA:   3'- -GCaaGAUGUAG----UGGUGGcuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 71790 0.7 0.908974
Target:  5'- gGggCUGCcgCACCagcugGCCGAGcuCGCGCg -3'
miRNA:   3'- gCaaGAUGuaGUGG-----UGGCUCu-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 72230 0.68 0.952574
Target:  5'- uGUUCUGCAgCACCAgCGAcugcccgcggccgccGACGC-Cg -3'
miRNA:   3'- gCAAGAUGUaGUGGUgGCU---------------CUGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 72351 0.69 0.926589
Target:  5'- -----cACGUCGCCGCCGcaGGGCaGCGCg -3'
miRNA:   3'- gcaagaUGUAGUGGUGGC--UCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 73354 0.7 0.891889
Target:  5'- gGUUCUGCggCAgguugcccauguccgUCACgGGGGCGCGCa -3'
miRNA:   3'- gCAAGAUGuaGU---------------GGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 75655 0.67 0.972098
Target:  5'- gGggCcgGC-UCGCCGCCGAGcagguaGCGCGCc -3'
miRNA:   3'- gCaaGa-UGuAGUGGUGGCUC------UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 77363 0.8 0.417459
Target:  5'- uGUUCUACGUCGCCgacgGCgGGGAcCGCGCg -3'
miRNA:   3'- gCAAGAUGUAGUGG----UGgCUCU-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 78029 0.66 0.98392
Target:  5'- gGUgcgCUACAUC-CCGgCGAcgcGGCGCAUc -3'
miRNA:   3'- gCAa--GAUGUAGuGGUgGCU---CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 78750 0.73 0.76095
Target:  5'- aCGUcCgcCGUCugCGCCGAGGCgGCGCu -3'
miRNA:   3'- -GCAaGauGUAGugGUGGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 81416 0.68 0.955016
Target:  5'- gGUg--GCGUCcCCGCCGAGGuCGCGg -3'
miRNA:   3'- gCAagaUGUAGuGGUGGCUCU-GCGUg -5'
29641 3' -51.8 NC_006151.1 + 81585 0.66 0.981931
Target:  5'- --gUCUcgcgcGCGUCGCCgggGCCGccGGCGCGCa -3'
miRNA:   3'- gcaAGA-----UGUAGUGG---UGGCu-CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81764 0.79 0.445033
Target:  5'- --gUCcGCGggCGCCACCGGGACGCGCu -3'
miRNA:   3'- gcaAGaUGUa-GUGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81866 0.7 0.915098
Target:  5'- gCGUcgcUCUcgacgcGCAggagCGCCggcGCCGAGGCGCGCc -3'
miRNA:   3'- -GCA---AGA------UGUa---GUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 82986 0.69 0.931954
Target:  5'- gCGcgUCUGCGcCGCCACgGccgcggcgcAGACGCGCg -3'
miRNA:   3'- -GCa-AGAUGUaGUGGUGgC---------UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 86593 0.67 0.977406
Target:  5'- cCGagCUGCuggcgcgCGCCGCCGAGuCGC-Cg -3'
miRNA:   3'- -GCaaGAUGua-----GUGGUGGCUCuGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 87286 0.68 0.950898
Target:  5'- gGggCUGCAcgCGCCGCCccccucgcccGuGGCGCACg -3'
miRNA:   3'- gCaaGAUGUa-GUGGUGG----------CuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 88431 0.76 0.61645
Target:  5'- gCGcgUC-ACGuUCACCACgGAGACGCGCg -3'
miRNA:   3'- -GCa-AGaUGU-AGUGGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 91661 0.68 0.962534
Target:  5'- cCGUcgUGgAUCACCugcGCCGGGugGUGCg -3'
miRNA:   3'- -GCAagAUgUAGUGG---UGGCUCugCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.