miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 2126 0.66 0.987396
Target:  5'- ------cCGUCGCCGCCGcGGACGC-Cg -3'
miRNA:   3'- gcaagauGUAGUGGUGGC-UCUGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 4678 0.7 0.887008
Target:  5'- gGUUCUGCAgccaggacauggccUCGCCggcgGCCccgcuguagauGAGGCGCACg -3'
miRNA:   3'- gCAAGAUGU--------------AGUGG----UGG-----------CUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 8299 0.68 0.962534
Target:  5'- gCGggCgccGCGUCccgccccgaGCCcCCGGGGCGCGCg -3'
miRNA:   3'- -GCaaGa--UGUAG---------UGGuGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 18864 0.66 0.985739
Target:  5'- cCGUUgUGgGUCAUCA-CGAGcACGUACa -3'
miRNA:   3'- -GCAAgAUgUAGUGGUgGCUC-UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 19106 0.78 0.523127
Target:  5'- aCGUagUACAgcaggCACCGCgGGGGCGCGCg -3'
miRNA:   3'- -GCAagAUGUa----GUGGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 19167 0.68 0.962534
Target:  5'- aGUUCUcgcGCgaGUCGCCcauguCCGAGAccaCGCGCg -3'
miRNA:   3'- gCAAGA---UG--UAGUGGu----GGCUCU---GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 21465 0.67 0.976662
Target:  5'- gCGUggUCccGCGUCGCCggcucgggcaggcgGCCGGGGgGCGCg -3'
miRNA:   3'- -GCA--AGa-UGUAGUGG--------------UGGCUCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 27155 0.72 0.817216
Target:  5'- gGUUC-ACGUCgGCC-CCGAGGCGcCGCg -3'
miRNA:   3'- gCAAGaUGUAG-UGGuGGCUCUGC-GUG- -5'
29641 3' -51.8 NC_006151.1 + 29218 0.68 0.950898
Target:  5'- gGUggggaUGgGUCACCGCCGGGucggcCGCGCc -3'
miRNA:   3'- gCAag---AUgUAGUGGUGGCUCu----GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 37637 0.69 0.931954
Target:  5'- aGUUCUGC--CAgCGCCGGGuccACGCGCc -3'
miRNA:   3'- gCAAGAUGuaGUgGUGGCUC---UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 39964 0.7 0.915098
Target:  5'- cCGggCgcCGUCGCCGCCGcGGGCGCc- -3'
miRNA:   3'- -GCaaGauGUAGUGGUGGC-UCUGCGug -5'
29641 3' -51.8 NC_006151.1 + 45845 0.74 0.72089
Target:  5'- --aUCUgccuggACGUCgcgGCCACCGAGGCGCAg -3'
miRNA:   3'- gcaAGA------UGUAG---UGGUGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 48834 0.66 0.98392
Target:  5'- aGUUCgACGUgGCCcccUCGuGGCGCGCg -3'
miRNA:   3'- gCAAGaUGUAgUGGu--GGCuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 52085 0.68 0.962534
Target:  5'- cCG-UCUGCAgCGCCGUCGAGAgcaGCGCg -3'
miRNA:   3'- -GCaAGAUGUaGUGGUGGCUCUg--CGUG- -5'
29641 3' -51.8 NC_006151.1 + 53633 0.67 0.977406
Target:  5'- gCGcUUCUGCAgcUCGCgCACCGucGGCGgGCu -3'
miRNA:   3'- -GC-AAGAUGU--AGUG-GUGGCu-CUGCgUG- -5'
29641 3' -51.8 NC_006151.1 + 59661 0.66 0.98392
Target:  5'- ---gCUGCGcagCGCCuCgGGGACGCGCg -3'
miRNA:   3'- gcaaGAUGUa--GUGGuGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 60142 0.69 0.926589
Target:  5'- gGUUC---GUCACCugCGAcaGGCGCGCc -3'
miRNA:   3'- gCAAGaugUAGUGGugGCU--CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 62371 0.72 0.834645
Target:  5'- -----gGCGUCGUCAUCGGGACGCGCg -3'
miRNA:   3'- gcaagaUGUAGUGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 63928 0.67 0.965944
Target:  5'- cCGUggggCUcGCGUCGuCCGCCGAGAacagGUACu -3'
miRNA:   3'- -GCAa---GA-UGUAGU-GGUGGCUCUg---CGUG- -5'
29641 3' -51.8 NC_006151.1 + 65572 0.66 0.981931
Target:  5'- gCG-UCUuCAcgGCCACCGAGcCGUACa -3'
miRNA:   3'- -GCaAGAuGUagUGGUGGCUCuGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.