miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 140294 0.69 0.926589
Target:  5'- uCGUgcgCcgGCGcCGCCugCGGGACGUGCg -3'
miRNA:   3'- -GCAa--Ga-UGUaGUGGugGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 140046 0.73 0.78976
Target:  5'- gGUgcggCcGCA-CGCCACCGAGGCgGCGCg -3'
miRNA:   3'- gCAa---GaUGUaGUGGUGGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 138674 0.67 0.974854
Target:  5'- --aUCUACGUgGCCcccaaCGAGACGgACg -3'
miRNA:   3'- gcaAGAUGUAgUGGug---GCUCUGCgUG- -5'
29641 3' -51.8 NC_006151.1 + 138605 0.66 0.98392
Target:  5'- gCGgcgCUGCcgCucggcgaggacGCCGCCgGGGGCGCGCc -3'
miRNA:   3'- -GCaa-GAUGuaG-----------UGGUGG-CUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 138199 0.66 0.987396
Target:  5'- cCGUgCUGCggCACC-UCGAcGCGCACu -3'
miRNA:   3'- -GCAaGAUGuaGUGGuGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 137554 0.67 0.96913
Target:  5'- gCGg---GCGUCcCCGCCGAGGUGUACa -3'
miRNA:   3'- -GCaagaUGUAGuGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 134739 0.67 0.965944
Target:  5'- gGgaCUuuGUCGCC-CCGAGcaGCGCGCg -3'
miRNA:   3'- gCaaGAugUAGUGGuGGCUC--UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 131848 0.7 0.915098
Target:  5'- -----aGCGggGCgGCCGAGACGCGCg -3'
miRNA:   3'- gcaagaUGUagUGgUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 129378 0.66 0.98392
Target:  5'- gGUUCcgGCAcgccCACCAgcuCUGGGugGCGCg -3'
miRNA:   3'- gCAAGa-UGUa---GUGGU---GGCUCugCGUG- -5'
29641 3' -51.8 NC_006151.1 + 129100 0.75 0.689962
Target:  5'- aGUUgCUGCGcacgagCGCCaggGCCGAGGCGCGCu -3'
miRNA:   3'- gCAA-GAUGUa-----GUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 124105 0.67 0.972098
Target:  5'- cCGcUUCUACGUCugcccGCCGCCGuccggcuccacGGugGUGCg -3'
miRNA:   3'- -GC-AAGAUGUAG-----UGGUGGC-----------UCugCGUG- -5'
29641 3' -51.8 NC_006151.1 + 123250 0.79 0.435728
Target:  5'- gCGUUCUGCGagGCCGCCGc-GCGCGCg -3'
miRNA:   3'- -GCAAGAUGUagUGGUGGCucUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 123215 0.67 0.965944
Target:  5'- aCGUg--GCgGUgGCCGCCGGGuuccGCGCACg -3'
miRNA:   3'- -GCAagaUG-UAgUGGUGGCUC----UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 121186 0.67 0.977406
Target:  5'- cCGUgCUGCA-CG-CGCuCGGGGCGCGCa -3'
miRNA:   3'- -GCAaGAUGUaGUgGUG-GCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 119191 0.67 0.96913
Target:  5'- -----cGCGggCGCCGCCGAcGCGCGCa -3'
miRNA:   3'- gcaagaUGUa-GUGGUGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 118350 0.67 0.96913
Target:  5'- --cUCUcGCG-CGCCugCGAGGCgGCGCg -3'
miRNA:   3'- gcaAGA-UGUaGUGGugGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 117107 0.67 0.977406
Target:  5'- --cUCgUGCGUCACCagGCCG--GCGCACa -3'
miRNA:   3'- gcaAG-AUGUAGUGG--UGGCucUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 115106 0.7 0.908974
Target:  5'- aCGUccagGCcggCGCCGCCGGcGACGCGCg -3'
miRNA:   3'- -GCAaga-UGua-GUGGUGGCU-CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 114132 0.66 0.987396
Target:  5'- ----gUGCGcCGCCGCCGAGcCGCGg -3'
miRNA:   3'- gcaagAUGUaGUGGUGGCUCuGCGUg -5'
29641 3' -51.8 NC_006151.1 + 113654 0.69 0.937066
Target:  5'- aCGcgCUGCGcaaggcgcagaUCGCCGCCGAGAacCGCu- -3'
miRNA:   3'- -GCaaGAUGU-----------AGUGGUGGCUCU--GCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.