miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 77363 0.8 0.417459
Target:  5'- uGUUCUACGUCGCCgacgGCgGGGAcCGCGCg -3'
miRNA:   3'- gCAAGAUGUAGUGG----UGgCUCU-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 123250 0.79 0.435728
Target:  5'- gCGUUCUGCGagGCCGCCGc-GCGCGCg -3'
miRNA:   3'- -GCAAGAUGUagUGGUGGCucUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81764 0.79 0.445033
Target:  5'- --gUCcGCGggCGCCACCGGGACGCGCu -3'
miRNA:   3'- gcaAGaUGUa-GUGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97557 0.78 0.503053
Target:  5'- cCGU----CGUCGCCGCCGAGGCGCAg -3'
miRNA:   3'- -GCAagauGUAGUGGUGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 19106 0.78 0.523127
Target:  5'- aCGUagUACAgcaggCACCGCgGGGGCGCGCg -3'
miRNA:   3'- -GCAagAUGUa----GUGGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 88431 0.76 0.61645
Target:  5'- gCGcgUC-ACGuUCACCACgGAGACGCGCg -3'
miRNA:   3'- -GCa-AGaUGU-AGUGGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 104164 0.75 0.669072
Target:  5'- gCGgagCUGCGcccCGCCGCCGAGcGCGCGCu -3'
miRNA:   3'- -GCaa-GAUGUa--GUGGUGGCUC-UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 97915 0.75 0.689962
Target:  5'- gCGga-UGcCGUCGCCGCCGAGGcCGCGCc -3'
miRNA:   3'- -GCaagAU-GUAGUGGUGGCUCU-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 129100 0.75 0.689962
Target:  5'- aGUUgCUGCGcacgagCGCCaggGCCGAGGCGCGCu -3'
miRNA:   3'- gCAA-GAUGUa-----GUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 45845 0.74 0.72089
Target:  5'- --aUCUgccuggACGUCgcgGCCACCGAGGCGCAg -3'
miRNA:   3'- gcaAGA------UGUAG---UGGUGGCUCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 78750 0.73 0.76095
Target:  5'- aCGUcCgcCGUCugCGCCGAGGCgGCGCu -3'
miRNA:   3'- -GCAaGauGUAGugGUGGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 140046 0.73 0.78976
Target:  5'- gGUgcggCcGCA-CGCCACCGAGGCgGCGCg -3'
miRNA:   3'- gCAa---GaUGUaGUGGUGGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 27155 0.72 0.817216
Target:  5'- gGUUC-ACGUCgGCC-CCGAGGCGcCGCg -3'
miRNA:   3'- gCAAGaUGUAG-UGGuGGCUCUGC-GUG- -5'
29641 3' -51.8 NC_006151.1 + 106736 0.72 0.833791
Target:  5'- aCGUUCaccgucACGggcUCGCCGCCGAgcagcgcGACGCGCg -3'
miRNA:   3'- -GCAAGa-----UGU---AGUGGUGGCU-------CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 62371 0.72 0.834645
Target:  5'- -----gGCGUCGUCAUCGGGACGCGCg -3'
miRNA:   3'- gcaagaUGUAGUGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 100693 0.71 0.882009
Target:  5'- aCGcUCcGCGagACCuggACCGAGGCGCGCg -3'
miRNA:   3'- -GCaAGaUGUagUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 4678 0.7 0.887008
Target:  5'- gGUUCUGCAgccaggacauggccUCGCCggcgGCCccgcuguagauGAGGCGCACg -3'
miRNA:   3'- gCAAGAUGU--------------AGUGG----UGG-----------CUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 73354 0.7 0.891889
Target:  5'- gGUUCUGCggCAgguugcccauguccgUCACgGGGGCGCGCa -3'
miRNA:   3'- gCAAGAUGuaGU---------------GGUGgCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 112228 0.7 0.9026
Target:  5'- gCGcUCgcuCGUCGCCGCCGccAGGCGCuGCg -3'
miRNA:   3'- -GCaAGau-GUAGUGGUGGC--UCUGCG-UG- -5'
29641 3' -51.8 NC_006151.1 + 71790 0.7 0.908974
Target:  5'- gGggCUGCcgCACCagcugGCCGAGcuCGCGCg -3'
miRNA:   3'- gCaaGAUGuaGUGG-----UGGCUCu-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.