miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 71790 0.7 0.908974
Target:  5'- gGggCUGCcgCACCagcugGCCGAGcuCGCGCg -3'
miRNA:   3'- gCaaGAUGuaGUGG-----UGGCUCu-GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 131848 0.7 0.915098
Target:  5'- -----aGCGggGCgGCCGAGACGCGCg -3'
miRNA:   3'- gcaagaUGUagUGgUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 81866 0.7 0.915098
Target:  5'- gCGUcgcUCUcgacgcGCAggagCGCCggcGCCGAGGCGCGCc -3'
miRNA:   3'- -GCA---AGA------UGUa---GUGG---UGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 39964 0.7 0.915098
Target:  5'- cCGggCgcCGUCGCCGCCGcGGGCGCc- -3'
miRNA:   3'- -GCaaGauGUAGUGGUGGC-UCUGCGug -5'
29641 3' -51.8 NC_006151.1 + 60142 0.69 0.926589
Target:  5'- gGUUC---GUCACCugCGAcaGGCGCGCc -3'
miRNA:   3'- gCAAGaugUAGUGGugGCU--CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 72351 0.69 0.926589
Target:  5'- -----cACGUCGCCGCCGcaGGGCaGCGCg -3'
miRNA:   3'- gcaagaUGUAGUGGUGGC--UCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 140294 0.69 0.926589
Target:  5'- uCGUgcgCcgGCGcCGCCugCGGGACGUGCg -3'
miRNA:   3'- -GCAa--Ga-UGUaGUGGugGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 98326 0.69 0.931954
Target:  5'- aGUUCUuCAUgGCCGCgggccgCGAGACGCccGCg -3'
miRNA:   3'- gCAAGAuGUAgUGGUG------GCUCUGCG--UG- -5'
29641 3' -51.8 NC_006151.1 + 82986 0.69 0.931954
Target:  5'- gCGcgUCUGCGcCGCCACgGccgcggcgcAGACGCGCg -3'
miRNA:   3'- -GCa-AGAUGUaGUGGUGgC---------UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 37637 0.69 0.931954
Target:  5'- aGUUCUGC--CAgCGCCGGGuccACGCGCc -3'
miRNA:   3'- gCAAGAUGuaGUgGUGGCUC---UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 113654 0.69 0.937066
Target:  5'- aCGcgCUGCGcaaggcgcagaUCGCCGCCGAGAacCGCu- -3'
miRNA:   3'- -GCaaGAUGU-----------AGUGGUGGCUCU--GCGug -5'
29641 3' -51.8 NC_006151.1 + 97608 0.69 0.937066
Target:  5'- gCGggC-ACGUgCACCugCGAGcgGCGCGCg -3'
miRNA:   3'- -GCaaGaUGUA-GUGGugGCUC--UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 87286 0.68 0.950898
Target:  5'- gGggCUGCAcgCGCCGCCccccucgcccGuGGCGCACg -3'
miRNA:   3'- gCaaGAUGUa-GUGGUGG----------CuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 29218 0.68 0.950898
Target:  5'- gGUggggaUGgGUCACCGCCGGGucggcCGCGCc -3'
miRNA:   3'- gCAag---AUgUAGUGGUGGCUCu----GCGUG- -5'
29641 3' -51.8 NC_006151.1 + 72230 0.68 0.952574
Target:  5'- uGUUCUGCAgCACCAgCGAcugcccgcggccgccGACGC-Cg -3'
miRNA:   3'- gCAAGAUGUaGUGGUgGCU---------------CUGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 81416 0.68 0.955016
Target:  5'- gGUg--GCGUCcCCGCCGAGGuCGCGg -3'
miRNA:   3'- gCAagaUGUAGuGGUGGCUCU-GCGUg -5'
29641 3' -51.8 NC_006151.1 + 8299 0.68 0.962534
Target:  5'- gCGggCgccGCGUCccgccccgaGCCcCCGGGGCGCGCg -3'
miRNA:   3'- -GCaaGa--UGUAG---------UGGuGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 52085 0.68 0.962534
Target:  5'- cCG-UCUGCAgCGCCGUCGAGAgcaGCGCg -3'
miRNA:   3'- -GCaAGAUGUaGUGGUGGCUCUg--CGUG- -5'
29641 3' -51.8 NC_006151.1 + 97467 0.68 0.962534
Target:  5'- uCGggCagGCGgcUCACCGCCacguGGACGCGCa -3'
miRNA:   3'- -GCaaGa-UGU--AGUGGUGGc---UCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 19167 0.68 0.962534
Target:  5'- aGUUCUcgcGCgaGUCGCCcauguCCGAGAccaCGCGCg -3'
miRNA:   3'- gCAAGA---UG--UAGUGGu----GGCUCU---GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.