miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 3' -51.8 NC_006151.1 + 86593 0.67 0.977406
Target:  5'- cCGagCUGCuggcgcgCGCCGCCGAGuCGC-Cg -3'
miRNA:   3'- -GCaaGAUGua-----GUGGUGGCUCuGCGuG- -5'
29641 3' -51.8 NC_006151.1 + 117107 0.67 0.977406
Target:  5'- --cUCgUGCGUCACCagGCCG--GCGCACa -3'
miRNA:   3'- gcaAG-AUGUAGUGG--UGGCucUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 121186 0.67 0.977406
Target:  5'- cCGUgCUGCA-CG-CGCuCGGGGCGCGCa -3'
miRNA:   3'- -GCAaGAUGUaGUgGUG-GCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 21465 0.67 0.976662
Target:  5'- gCGUggUCccGCGUCGCCggcucgggcaggcgGCCGGGGgGCGCg -3'
miRNA:   3'- -GCA--AGa-UGUAGUGG--------------UGGCUCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 138674 0.67 0.974854
Target:  5'- --aUCUACGUgGCCcccaaCGAGACGgACg -3'
miRNA:   3'- gcaAGAUGUAgUGGug---GCUCUGCgUG- -5'
29641 3' -51.8 NC_006151.1 + 103693 0.67 0.974854
Target:  5'- gGUgCUGCG-CGCCGCCGuGGaGCACc -3'
miRNA:   3'- gCAaGAUGUaGUGGUGGCuCUgCGUG- -5'
29641 3' -51.8 NC_006151.1 + 95953 0.67 0.974319
Target:  5'- --cUCUGCAgcgagagcccgaCGCCGCCGcGGCGCAg -3'
miRNA:   3'- gcaAGAUGUa-----------GUGGUGGCuCUGCGUg -5'
29641 3' -51.8 NC_006151.1 + 124105 0.67 0.972098
Target:  5'- cCGcUUCUACGUCugcccGCCGCCGuccggcuccacGGugGUGCg -3'
miRNA:   3'- -GC-AAGAUGUAG-----UGGUGGC-----------UCugCGUG- -5'
29641 3' -51.8 NC_006151.1 + 75655 0.67 0.972098
Target:  5'- gGggCcgGC-UCGCCGCCGAGcagguaGCGCGCc -3'
miRNA:   3'- gCaaGa-UGuAGUGGUGGCUC------UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 67324 0.67 0.972098
Target:  5'- aGggCgagaACAUCACCGucaccuuccCCGAcGGCGCGCg -3'
miRNA:   3'- gCaaGa---UGUAGUGGU---------GGCU-CUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 113278 0.67 0.96913
Target:  5'- -----cGCAaCACCGCCGcGGCGUACg -3'
miRNA:   3'- gcaagaUGUaGUGGUGGCuCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 118350 0.67 0.96913
Target:  5'- --cUCUcGCG-CGCCugCGAGGCgGCGCg -3'
miRNA:   3'- gcaAGA-UGUaGUGGugGCUCUG-CGUG- -5'
29641 3' -51.8 NC_006151.1 + 137554 0.67 0.96913
Target:  5'- gCGg---GCGUCcCCGCCGAGGUGUACa -3'
miRNA:   3'- -GCaagaUGUAGuGGUGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 119191 0.67 0.96913
Target:  5'- -----cGCGggCGCCGCCGAcGCGCGCa -3'
miRNA:   3'- gcaagaUGUa-GUGGUGGCUcUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 63928 0.67 0.965944
Target:  5'- cCGUggggCUcGCGUCGuCCGCCGAGAacagGUACu -3'
miRNA:   3'- -GCAa---GA-UGUAGU-GGUGGCUCUg---CGUG- -5'
29641 3' -51.8 NC_006151.1 + 134739 0.67 0.965944
Target:  5'- gGgaCUuuGUCGCC-CCGAGcaGCGCGCg -3'
miRNA:   3'- gCaaGAugUAGUGGuGGCUC--UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 123215 0.67 0.965944
Target:  5'- aCGUg--GCgGUgGCCGCCGGGuuccGCGCACg -3'
miRNA:   3'- -GCAagaUG-UAgUGGUGGCUC----UGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 52085 0.68 0.962534
Target:  5'- cCG-UCUGCAgCGCCGUCGAGAgcaGCGCg -3'
miRNA:   3'- -GCaAGAUGUaGUGGUGGCUCUg--CGUG- -5'
29641 3' -51.8 NC_006151.1 + 8299 0.68 0.962534
Target:  5'- gCGggCgccGCGUCccgccccgaGCCcCCGGGGCGCGCg -3'
miRNA:   3'- -GCaaGa--UGUAG---------UGGuGGCUCUGCGUG- -5'
29641 3' -51.8 NC_006151.1 + 91661 0.68 0.962534
Target:  5'- cCGUcgUGgAUCACCugcGCCGGGugGUGCg -3'
miRNA:   3'- -GCAagAUgUAGUGG---UGGCUCugCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.