Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 3' | -51.8 | NC_006151.1 | + | 52085 | 0.68 | 0.962534 |
Target: 5'- cCG-UCUGCAgCGCCGUCGAGAgcaGCGCg -3' miRNA: 3'- -GCaAGAUGUaGUGGUGGCUCUg--CGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 97467 | 0.68 | 0.962534 |
Target: 5'- uCGggCagGCGgcUCACCGCCacguGGACGCGCa -3' miRNA: 3'- -GCaaGa-UGU--AGUGGUGGc---UCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 81416 | 0.68 | 0.955016 |
Target: 5'- gGUg--GCGUCcCCGCCGAGGuCGCGg -3' miRNA: 3'- gCAagaUGUAGuGGUGGCUCU-GCGUg -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 72230 | 0.68 | 0.952574 |
Target: 5'- uGUUCUGCAgCACCAgCGAcugcccgcggccgccGACGC-Cg -3' miRNA: 3'- gCAAGAUGUaGUGGUgGCU---------------CUGCGuG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 87286 | 0.68 | 0.950898 |
Target: 5'- gGggCUGCAcgCGCCGCCccccucgcccGuGGCGCACg -3' miRNA: 3'- gCaaGAUGUa-GUGGUGG----------CuCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 29218 | 0.68 | 0.950898 |
Target: 5'- gGUggggaUGgGUCACCGCCGGGucggcCGCGCc -3' miRNA: 3'- gCAag---AUgUAGUGGUGGCUCu----GCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 97608 | 0.69 | 0.937066 |
Target: 5'- gCGggC-ACGUgCACCugCGAGcgGCGCGCg -3' miRNA: 3'- -GCaaGaUGUA-GUGGugGCUC--UGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 113654 | 0.69 | 0.937066 |
Target: 5'- aCGcgCUGCGcaaggcgcagaUCGCCGCCGAGAacCGCu- -3' miRNA: 3'- -GCaaGAUGU-----------AGUGGUGGCUCU--GCGug -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 98326 | 0.69 | 0.931954 |
Target: 5'- aGUUCUuCAUgGCCGCgggccgCGAGACGCccGCg -3' miRNA: 3'- gCAAGAuGUAgUGGUG------GCUCUGCG--UG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 82986 | 0.69 | 0.931954 |
Target: 5'- gCGcgUCUGCGcCGCCACgGccgcggcgcAGACGCGCg -3' miRNA: 3'- -GCa-AGAUGUaGUGGUGgC---------UCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 37637 | 0.69 | 0.931954 |
Target: 5'- aGUUCUGC--CAgCGCCGGGuccACGCGCc -3' miRNA: 3'- gCAAGAUGuaGUgGUGGCUC---UGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 140294 | 0.69 | 0.926589 |
Target: 5'- uCGUgcgCcgGCGcCGCCugCGGGACGUGCg -3' miRNA: 3'- -GCAa--Ga-UGUaGUGGugGCUCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 72351 | 0.69 | 0.926589 |
Target: 5'- -----cACGUCGCCGCCGcaGGGCaGCGCg -3' miRNA: 3'- gcaagaUGUAGUGGUGGC--UCUG-CGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 60142 | 0.69 | 0.926589 |
Target: 5'- gGUUC---GUCACCugCGAcaGGCGCGCc -3' miRNA: 3'- gCAAGaugUAGUGGugGCU--CUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 131848 | 0.7 | 0.915098 |
Target: 5'- -----aGCGggGCgGCCGAGACGCGCg -3' miRNA: 3'- gcaagaUGUagUGgUGGCUCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 81866 | 0.7 | 0.915098 |
Target: 5'- gCGUcgcUCUcgacgcGCAggagCGCCggcGCCGAGGCGCGCc -3' miRNA: 3'- -GCA---AGA------UGUa---GUGG---UGGCUCUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 39964 | 0.7 | 0.915098 |
Target: 5'- cCGggCgcCGUCGCCGCCGcGGGCGCc- -3' miRNA: 3'- -GCaaGauGUAGUGGUGGC-UCUGCGug -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 115106 | 0.7 | 0.908974 |
Target: 5'- aCGUccagGCcggCGCCGCCGGcGACGCGCg -3' miRNA: 3'- -GCAaga-UGua-GUGGUGGCU-CUGCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 71790 | 0.7 | 0.908974 |
Target: 5'- gGggCUGCcgCACCagcugGCCGAGcuCGCGCg -3' miRNA: 3'- gCaaGAUGuaGUGG-----UGGCUCu-GCGUG- -5' |
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29641 | 3' | -51.8 | NC_006151.1 | + | 112228 | 0.7 | 0.9026 |
Target: 5'- gCGcUCgcuCGUCGCCGCCGccAGGCGCuGCg -3' miRNA: 3'- -GCaAGau-GUAGUGGUGGC--UCUGCG-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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