miRNA display CGI


Results 61 - 80 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 134805 0.67 0.340889
Target:  5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3'
miRNA:   3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 58079 0.67 0.340889
Target:  5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3'
miRNA:   3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 66051 0.67 0.340889
Target:  5'- cCGGUGCCuguccaggaCCCC-GCGGACGGC-CGc- -3'
miRNA:   3'- -GCCGCGG---------GGGGcCGCCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 10517 0.67 0.333814
Target:  5'- aGGCGCgUCCCCGGCgcGGGCGcCUCu-- -3'
miRNA:   3'- gCCGCG-GGGGGCCG--CCUGCcGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 118226 0.67 0.333814
Target:  5'- gGGCGCCCggaccaccgggCUCGGCGG-CgGGCUCa-- -3'
miRNA:   3'- gCCGCGGG-----------GGGCCGCCuG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 82674 0.67 0.333814
Target:  5'- gCGGCGCgCCgCGGgcgaGGGCGGCggcccccgCGAGg -3'
miRNA:   3'- -GCCGCGgGGgGCCg---CCUGCCGa-------GCUU- -5'
29641 5' -67.3 NC_006151.1 + 101543 0.67 0.333814
Target:  5'- uGGCGCgCCugcgCCCGGCGGACGuGUaCGc- -3'
miRNA:   3'- gCCGCG-GG----GGGCCGCCUGC-CGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 115553 0.67 0.331712
Target:  5'- aCGGCguacucGCCCgCgGGCGGGCGcgcgggcaggucgcGCUCGAGc -3'
miRNA:   3'- -GCCG------CGGGgGgCCGCCUGC--------------CGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 51577 0.67 0.326847
Target:  5'- uCGGC-CCCCCUcgggcgGGUGGACGGCg---- -3'
miRNA:   3'- -GCCGcGGGGGG------CCGCCUGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 122453 0.67 0.326847
Target:  5'- gCGGCGUCCa-CGGCGG-CGGCgggcgcCGAGg -3'
miRNA:   3'- -GCCGCGGGggGCCGCCuGCCGa-----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 97171 0.68 0.319988
Target:  5'- -aGCGCUCggCCCGGCGcacGACGcGCUCGAc -3'
miRNA:   3'- gcCGCGGG--GGGCCGC---CUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 117793 0.68 0.319988
Target:  5'- gGGCGCCaCgCCCGGCGgGGCGGggCc-- -3'
miRNA:   3'- gCCGCGG-G-GGGCCGC-CUGCCgaGcuu -5'
29641 5' -67.3 NC_006151.1 + 30676 0.68 0.313238
Target:  5'- cCGGgaaGCcuCCCCCGGCGGGCGGgggggugUCGGGg -3'
miRNA:   3'- -GCCg--CG--GGGGGCCGCCUGCCg------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 135146 0.68 0.313238
Target:  5'- gGGCaGaCCCagCCCGGCGGgcGCGGCcCGGAc -3'
miRNA:   3'- gCCG-C-GGG--GGGCCGCC--UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 102510 0.68 0.313238
Target:  5'- gCGGCGCgggaCCCCGGCGG-CGuCUaCGAc -3'
miRNA:   3'- -GCCGCGg---GGGGCCGCCuGCcGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 95334 0.68 0.313238
Target:  5'- aGGCGCCgCCCGccaggcacGCGGGCaGGUUCa-- -3'
miRNA:   3'- gCCGCGGgGGGC--------CGCCUG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 69220 0.68 0.306596
Target:  5'- cCGGcCGCCCCa-GGCGGugGaguGCUCGu- -3'
miRNA:   3'- -GCC-GCGGGGggCCGCCugC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 36264 0.68 0.300063
Target:  5'- cCGG-GUCCCCCGGuCGGGCucuccaucagGGCUcCGAGc -3'
miRNA:   3'- -GCCgCGGGGGGCC-GCCUG----------CCGA-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 5605 0.68 0.300063
Target:  5'- gCGGUcCCCUCCGGCGGAgGGggCGc- -3'
miRNA:   3'- -GCCGcGGGGGGCCGCCUgCCgaGCuu -5'
29641 5' -67.3 NC_006151.1 + 72919 0.68 0.300063
Target:  5'- uGGCGaCCgCCUCGGCGGGCGugaagaaCUUGAAg -3'
miRNA:   3'- gCCGC-GG-GGGGCCGCCUGCc------GAGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.