miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 57290 0.67 0.36276
Target:  5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3'
miRNA:   3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 139268 0.67 0.36276
Target:  5'- cCGcGCGCUCCgaCGGCGGACGcGCcgcccUCGGc -3'
miRNA:   3'- -GC-CGCGGGGg-GCCGCCUGC-CG-----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 50428 0.67 0.360529
Target:  5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3'
miRNA:   3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 55474 0.67 0.355362
Target:  5'- gGGCGCgCgCCCGGCgccgcGGACGGC-Ca-- -3'
miRNA:   3'- gCCGCGgG-GGGCCG-----CCUGCCGaGcuu -5'
29641 5' -67.3 NC_006151.1 + 81418 0.67 0.355362
Target:  5'- uGGCGUCCCCgccgaggucgCGGCGcagcgaGACGGCgcacggCGAGa -3'
miRNA:   3'- gCCGCGGGGG----------GCCGC------CUGCCGa-----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 86806 0.67 0.355362
Target:  5'- gCGGgGCCuCCCCGGCGccCGGCccagugCGGc -3'
miRNA:   3'- -GCCgCGG-GGGGCCGCcuGCCGa-----GCUu -5'
29641 5' -67.3 NC_006151.1 + 107035 0.67 0.355362
Target:  5'- gCGGCGCggCCCCUGGCcGGCGaGC-CGGc -3'
miRNA:   3'- -GCCGCG--GGGGGCCGcCUGC-CGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 127912 0.67 0.355362
Target:  5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3'
miRNA:   3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5'
29641 5' -67.3 NC_006151.1 + 131506 0.67 0.355362
Target:  5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3'
miRNA:   3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 142270 0.67 0.355362
Target:  5'- gGaGCGCCCcguCCCGGCGGccagacCGGC-CGGGa -3'
miRNA:   3'- gC-CGCGGG---GGGCCGCCu-----GCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 69066 0.67 0.355362
Target:  5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3'
miRNA:   3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 5392 0.67 0.354629
Target:  5'- gGGCGCCCcgccgucCCCGGCGa--GGC-CGAGu -3'
miRNA:   3'- gCCGCGGG-------GGGCCGCcugCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 20113 0.67 0.348072
Target:  5'- gGGCGCCCCggcgacggggCUGGgGGGCgGGCgccgCGGGg -3'
miRNA:   3'- gCCGCGGGG----------GGCCgCCUG-CCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 9385 0.67 0.348072
Target:  5'- gGGgGCCCCCCGcGCGGGuCGGg----- -3'
miRNA:   3'- gCCgCGGGGGGC-CGCCU-GCCgagcuu -5'
29641 5' -67.3 NC_006151.1 + 40086 0.67 0.348072
Target:  5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3'
miRNA:   3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5'
29641 5' -67.3 NC_006151.1 + 78331 0.67 0.348072
Target:  5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3'
miRNA:   3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5'
29641 5' -67.3 NC_006151.1 + 58079 0.67 0.340889
Target:  5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3'
miRNA:   3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 134805 0.67 0.340889
Target:  5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3'
miRNA:   3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 4996 0.67 0.340889
Target:  5'- gCGGCGCUUCCUGcGCGGG-GGC-CGGg -3'
miRNA:   3'- -GCCGCGGGGGGC-CGCCUgCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 112083 0.67 0.340889
Target:  5'- uGGaGCUCCCCGGguCGGGCGGCg-GAc -3'
miRNA:   3'- gCCgCGGGGGGCC--GCCUGCCGagCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.