miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 9046 0.66 0.392616
Target:  5'- gGGCGCCCCgcgugcuCCGGgGGcgcCGGC-CGGc -3'
miRNA:   3'- gCCGCGGGG-------GGCCgCCu--GCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 97500 0.66 0.385586
Target:  5'- -aGCGCCUCgCGGCGGugGcGCUgCGu- -3'
miRNA:   3'- gcCGCGGGGgGCCGCCugC-CGA-GCuu -5'
29641 5' -67.3 NC_006151.1 + 59929 0.66 0.385586
Target:  5'- aGGCGCgCgCCGucaGCGG-CGGCUCGc- -3'
miRNA:   3'- gCCGCGgGgGGC---CGCCuGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 136420 0.66 0.385586
Target:  5'- gCGGgGCCCCgCGGCGGcgcacgccGCGcGCuacgUCGAc -3'
miRNA:   3'- -GCCgCGGGGgGCCGCC--------UGC-CG----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 123764 0.66 0.385586
Target:  5'- uGGCGCgggCCCCGGgGGcauCGGCcCGGg -3'
miRNA:   3'- gCCGCGg--GGGGCCgCCu--GCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 28871 0.66 0.38481
Target:  5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 28590 0.66 0.38481
Target:  5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 141756 0.66 0.377873
Target:  5'- gGGCGCgCgCCCCGGUGGcgucgcCGGUUCu-- -3'
miRNA:   3'- gCCGCG-G-GGGGCCGCCu-----GCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 100430 0.66 0.377873
Target:  5'- gGGCGCUgCgCGGCGuGAUGGCgcagaCGAc -3'
miRNA:   3'- gCCGCGGgGgGCCGC-CUGCCGa----GCUu -5'
29641 5' -67.3 NC_006151.1 + 137042 0.66 0.377873
Target:  5'- aCGcGUGCCCCCCGGCGc-CGGUguaccgcgUGGAg -3'
miRNA:   3'- -GC-CGCGGGGGGCCGCcuGCCGa-------GCUU- -5'
29641 5' -67.3 NC_006151.1 + 20466 0.67 0.372535
Target:  5'- uGGCGCcgguCCCCCGggggggcGCGGGggucgucggcggcucUGGCUCGAu -3'
miRNA:   3'- gCCGCG----GGGGGC-------CGCCU---------------GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 14253 0.67 0.370263
Target:  5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3'
miRNA:   3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 31219 0.67 0.370263
Target:  5'- aGGCcgGgCCCCCGGcCGGcCGGCccggCGAGc -3'
miRNA:   3'- gCCG--CgGGGGGCC-GCCuGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 31740 0.67 0.370263
Target:  5'- aGGCGCCCgCgCCGG-GGACGcGCcugCGGc -3'
miRNA:   3'- gCCGCGGG-G-GGCCgCCUGC-CGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 9884 0.67 0.370263
Target:  5'- gGGCGCUuccuCCCCGGCGGucCGGgaaGAAa -3'
miRNA:   3'- gCCGCGG----GGGGCCGCCu-GCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 76793 0.67 0.370263
Target:  5'- uCGGCGCCguacagcgCCCCGGCgaGGGCGGgCgCGu- -3'
miRNA:   3'- -GCCGCGG--------GGGGCCG--CCUGCC-GaGCuu -5'
29641 5' -67.3 NC_006151.1 + 127694 0.67 0.370263
Target:  5'- gCGGCGCUCUCCuGC-GACGaGCUCGu- -3'
miRNA:   3'- -GCCGCGGGGGGcCGcCUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 75454 0.67 0.370263
Target:  5'- uGGCGCgCguagcggUCGGCGGcCGGCUUGAAg -3'
miRNA:   3'- gCCGCGgGg------GGCCGCCuGCCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 57290 0.67 0.36276
Target:  5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3'
miRNA:   3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 56350 0.67 0.36276
Target:  5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3'
miRNA:   3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.