miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 33910 0.72 0.174194
Target:  5'- -cGCGCCUccgcgUCCGGCGGGCGGaUCGAGg -3'
miRNA:   3'- gcCGCGGG-----GGGCCGCCUGCCgAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 7017 0.72 0.174194
Target:  5'- cCGGC-CCCCgCGGCGGccaucuCGGCUCGc- -3'
miRNA:   3'- -GCCGcGGGGgGCCGCCu-----GCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 114701 0.71 0.178339
Target:  5'- gGGCGCgUCCCCGG-GGGCGGUUucCGGAa -3'
miRNA:   3'- gCCGCG-GGGGGCCgCCUGCCGA--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 68035 0.71 0.182143
Target:  5'- aGGCGgCCCgCCGGCGcGGCgggcacgGGCUCGGc -3'
miRNA:   3'- gCCGCgGGG-GGCCGC-CUG-------CCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 130291 0.71 0.18689
Target:  5'- gGGCGCgCgCCGGCcGACGGCgCGGAg -3'
miRNA:   3'- gCCGCGgGgGGCCGcCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 20304 0.71 0.18689
Target:  5'- gGGCGCCCgCCgUGGCGuuGGCGGCggCGAGc -3'
miRNA:   3'- gCCGCGGG-GG-GCCGC--CUGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 48229 0.71 0.191301
Target:  5'- -cGCGCUCCCCGGCGcGAgGaGCUgGAAu -3'
miRNA:   3'- gcCGCGGGGGGCCGC-CUgC-CGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 47214 0.71 0.191301
Target:  5'- uCGGgGCUCUcgggUCGGCuGGGCGGCUCGGc -3'
miRNA:   3'- -GCCgCGGGG----GGCCG-CCUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 40255 0.71 0.195802
Target:  5'- gGGCGCCCCCuCGGCc--CGGC-CGGAc -3'
miRNA:   3'- gCCGCGGGGG-GCCGccuGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 52370 0.71 0.200395
Target:  5'- cCGGCGCgCCCCCGGggcccgcggGGGCGGCgggCGc- -3'
miRNA:   3'- -GCCGCG-GGGGGCCg--------CCUGCCGa--GCuu -5'
29641 5' -67.3 NC_006151.1 + 129242 0.71 0.200395
Target:  5'- gGuGCGCCCCUCGGUGacGCGGCgCGAGg -3'
miRNA:   3'- gC-CGCGGGGGGCCGCc-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 125241 0.71 0.204609
Target:  5'- cCGGCGCuCCCCCGGCccggcggGGAC-GCcCGAGc -3'
miRNA:   3'- -GCCGCG-GGGGGCCG-------CCUGcCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 90744 0.7 0.209863
Target:  5'- gCGGCGCCCUCgggggCGGCGGgcACGGUggCGGGg -3'
miRNA:   3'- -GCCGCGGGGG-----GCCGCC--UGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 139593 0.7 0.209863
Target:  5'- -cGCGCCCCCCcgagcGGCGGcccguccgggcGCGGCUgGGGg -3'
miRNA:   3'- gcCGCGGGGGG-----CCGCC-----------UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 91115 0.7 0.214741
Target:  5'- gCGGCGCCCuucgCCaCGGCGG-CGaGCUUGGc -3'
miRNA:   3'- -GCCGCGGG----GG-GCCGCCuGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 20752 0.7 0.214741
Target:  5'- cCGGCGCgCCUCCaccgcGGCGGACGcGCgccgggCGAGc -3'
miRNA:   3'- -GCCGCG-GGGGG-----CCGCCUGC-CGa-----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 3140 0.7 0.224787
Target:  5'- gCGGgGCgCCCUCGGCGGGCucGGCgcaGAGc -3'
miRNA:   3'- -GCCgCG-GGGGGCCGCCUG--CCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 46567 0.7 0.229958
Target:  5'- aGGCGCUCCCCGcGCagggcccgacGGGCGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGGC-CG----------CCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 55879 0.7 0.229958
Target:  5'- gCGGCGCUgUCgCGGCGGACGuGCgccgggCGAc -3'
miRNA:   3'- -GCCGCGGgGG-GCCGCCUGC-CGa-----GCUu -5'
29641 5' -67.3 NC_006151.1 + 70943 0.7 0.229958
Target:  5'- aCGGCGCCUUCuCGGCGGugcgcgUGGCcgUCGAGg -3'
miRNA:   3'- -GCCGCGGGGG-GCCGCCu-----GCCG--AGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.