miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 26375 0.81 0.035716
Target:  5'- gCGcGCGUCCCCCGGCGGGCGGCg---- -3'
miRNA:   3'- -GC-CGCGGGGGGCCGCCUGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 2222 0.79 0.049683
Target:  5'- aCGGCGCCCCC-GGCGG-CGGCgCGGAc -3'
miRNA:   3'- -GCCGCGGGGGgCCGCCuGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 120773 0.78 0.06079
Target:  5'- gCGGCGCCCgCUGGCGGacGCGGC-CGAc -3'
miRNA:   3'- -GCCGCGGGgGGCCGCC--UGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 79317 0.75 0.095207
Target:  5'- aCGG-GCCuCCCCGGCgGGACGGC-CGGGu -3'
miRNA:   3'- -GCCgCGG-GGGGCCG-CCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 77242 0.75 0.095207
Target:  5'- aGGCGCCCCCCGGCGGGuuuaaaggagUGGUcgCGc- -3'
miRNA:   3'- gCCGCGGGGGGCCGCCU----------GCCGa-GCuu -5'
29641 5' -67.3 NC_006151.1 + 21450 0.75 0.106872
Target:  5'- gGGUGgCCCCCGGCGGcguggucccgcgucGcCGGCUCGGg -3'
miRNA:   3'- gCCGCgGGGGGCCGCC--------------U-GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 54624 0.74 0.110329
Target:  5'- gGGCGCgCCCCGGgGGgaaGCGGCggcgCGAGc -3'
miRNA:   3'- gCCGCGgGGGGCCgCC---UGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 10560 0.74 0.115851
Target:  5'- cCGGCGCCCaaUGGCGcGGcCGGCUCGGc -3'
miRNA:   3'- -GCCGCGGGggGCCGC-CU-GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 139958 0.74 0.118708
Target:  5'- uCGGCGCCgagcaguucaCCCCGGaCGGGCGGCgCGu- -3'
miRNA:   3'- -GCCGCGG----------GGGGCC-GCCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 15675 0.73 0.127678
Target:  5'- ---aGCCCCCCGa-GGACGGCUCGGAc -3'
miRNA:   3'- gccgCGGGGGGCcgCCUGCCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 45560 0.73 0.130804
Target:  5'- aCGGCGCgCCCgGGCcaucgucccgGGACGGCcCGAGg -3'
miRNA:   3'- -GCCGCGgGGGgCCG----------CCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 133679 0.73 0.144029
Target:  5'- gCGGCGCgCCCCCgaGGCGGucucguCGGCggCGAc -3'
miRNA:   3'- -GCCGCG-GGGGG--CCGCCu-----GCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 40569 0.73 0.144029
Target:  5'- gCGGCGgCggCCgCGGCGGAgGGCUCGGc -3'
miRNA:   3'- -GCCGCgG--GGgGCCGCCUgCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 36924 0.73 0.147521
Target:  5'- aGGCGCCCUCCGccGCGGccGCGGCUUc-- -3'
miRNA:   3'- gCCGCGGGGGGC--CGCC--UGCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 19838 0.73 0.147521
Target:  5'- aCGGgGCCCggggucguCUCGGCGGAgaGGCUCGGGg -3'
miRNA:   3'- -GCCgCGGG--------GGGCCGCCUg-CCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 65794 0.72 0.15109
Target:  5'- uGGCGCCgCCCGGCgcGGACGuGCcgCGGu -3'
miRNA:   3'- gCCGCGGgGGGCCG--CCUGC-CGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 123008 0.72 0.15109
Target:  5'- cCGGCGCgCCCCCgccGGCGGACgccguGGCgugggCGGAc -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCCUG-----CCGa----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 33224 0.72 0.154738
Target:  5'- gCGGgGCgCCCCGGCGGGCGGga-GGGg -3'
miRNA:   3'- -GCCgCGgGGGGCCGCCUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 57164 0.72 0.154738
Target:  5'- gGGCGUCCCCCGGC--GCGGCccaGAAg -3'
miRNA:   3'- gCCGCGGGGGGCCGccUGCCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 56598 0.72 0.162272
Target:  5'- gCGGaCGCgCCCCGGCGG-CGcGCUCa-- -3'
miRNA:   3'- -GCC-GCGgGGGGCCGCCuGC-CGAGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.