miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 2222 0.79 0.049683
Target:  5'- aCGGCGCCCCC-GGCGG-CGGCgCGGAc -3'
miRNA:   3'- -GCCGCGGGGGgCCGCCuGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 2286 0.68 0.293637
Target:  5'- gCGGgGCgCCCgCGGCGGcgACGGCgccCGGGg -3'
miRNA:   3'- -GCCgCGgGGG-GCCGCC--UGCCGa--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 3140 0.7 0.224787
Target:  5'- gCGGgGCgCCCUCGGCGGGCucGGCgcaGAGc -3'
miRNA:   3'- -GCCgCG-GGGGGCCGCCUG--CCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 4380 0.69 0.274402
Target:  5'- aCGGuCGCCuCCCCGGCGcGgggguccGCGGCgCGGc -3'
miRNA:   3'- -GCC-GCGG-GGGGCCGC-C-------UGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 4431 0.7 0.235229
Target:  5'- uCGGCGUaggCCCGGCGGA-GGCUCu-- -3'
miRNA:   3'- -GCCGCGgg-GGGCCGCCUgCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 4996 0.67 0.340889
Target:  5'- gCGGCGCUUCCUGcGCGGG-GGC-CGGg -3'
miRNA:   3'- -GCCGCGGGGGGC-CGCCUgCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 5349 0.67 0.340889
Target:  5'- gGGCGCCCUcuCCGGC--GCGGCgccggCGGGg -3'
miRNA:   3'- gCCGCGGGG--GGCCGccUGCCGa----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 5392 0.67 0.354629
Target:  5'- gGGCGCCCcgccgucCCCGGCGa--GGC-CGAGu -3'
miRNA:   3'- gCCGCGGG-------GGGCCGCcugCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 5605 0.68 0.300063
Target:  5'- gCGGUcCCCUCCGGCGGAgGGggCGc- -3'
miRNA:   3'- -GCCGcGGGGGGCCGCCUgCCgaGCuu -5'
29641 5' -67.3 NC_006151.1 + 7017 0.72 0.174194
Target:  5'- cCGGC-CCCCgCGGCGGccaucuCGGCUCGc- -3'
miRNA:   3'- -GCCGcGGGGgGCCGCCu-----GCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 9046 0.66 0.392616
Target:  5'- gGGCGCCCCgcgugcuCCGGgGGcgcCGGC-CGGc -3'
miRNA:   3'- gCCGCGGGG-------GGCCgCCu--GCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 9385 0.67 0.348072
Target:  5'- gGGgGCCCCCCGcGCGGGuCGGg----- -3'
miRNA:   3'- gCCgCGGGGGGC-CGCCU-GCCgagcuu -5'
29641 5' -67.3 NC_006151.1 + 9884 0.67 0.370263
Target:  5'- gGGCGCUuccuCCCCGGCGGucCGGgaaGAAa -3'
miRNA:   3'- gCCGCGG----GGGGCCGCCu-GCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 10517 0.67 0.333814
Target:  5'- aGGCGCgUCCCCGGCgcGGGCGcCUCu-- -3'
miRNA:   3'- gCCGCG-GGGGGCCG--CCUGCcGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 10560 0.74 0.115851
Target:  5'- cCGGCGCCCaaUGGCGcGGcCGGCUCGGc -3'
miRNA:   3'- -GCCGCGGGggGCCGC-CU-GCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 14253 0.67 0.370263
Target:  5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3'
miRNA:   3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 15675 0.73 0.127678
Target:  5'- ---aGCCCCCCGa-GGACGGCUCGGAc -3'
miRNA:   3'- gccgCGGGGGGCcgCCUGCCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 17109 0.69 0.246076
Target:  5'- gGGCGCCgggggCUCCGGCGG-CGGUgcugCGGGa -3'
miRNA:   3'- gCCGCGG-----GGGGCCGCCuGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 19283 0.66 0.401322
Target:  5'- gCGGgGCCCaCCGgggccagcggcGCGGGCGGC-CGGu -3'
miRNA:   3'- -GCCgCGGGgGGC-----------CGCCUGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 19838 0.73 0.147521
Target:  5'- aCGGgGCCCggggucguCUCGGCGGAgaGGCUCGGGg -3'
miRNA:   3'- -GCCgCGGG--------GGGCCGCCUg-CCGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.