miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 142270 0.67 0.355362
Target:  5'- gGaGCGCCCcguCCCGGCGGccagacCGGC-CGGGa -3'
miRNA:   3'- gC-CGCGGG---GGGCCGCCu-----GCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 141756 0.66 0.377873
Target:  5'- gGGCGCgCgCCCCGGUGGcgucgcCGGUUCu-- -3'
miRNA:   3'- gCCGCG-G-GGGGCCGCCu-----GCCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 140447 0.68 0.28111
Target:  5'- cCGGCGCCugCCUCGGCGGgaucauggACGcGCUgGAc -3'
miRNA:   3'- -GCCGCGG--GGGGCCGCC--------UGC-CGAgCUu -5'
29641 5' -67.3 NC_006151.1 + 139958 0.74 0.118708
Target:  5'- uCGGCGCCgagcaguucaCCCCGGaCGGGCGGCgCGu- -3'
miRNA:   3'- -GCCGCGG----------GGGGCC-GCCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 139593 0.7 0.209863
Target:  5'- -cGCGCCCCCCcgagcGGCGGcccguccgggcGCGGCUgGGGg -3'
miRNA:   3'- gcCGCGGGGGG-----CCGCC-----------UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 139268 0.67 0.36276
Target:  5'- cCGcGCGCUCCgaCGGCGGACGcGCcgcccUCGGc -3'
miRNA:   3'- -GC-CGCGGGGg-GCCGCCUGC-CG-----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 137650 0.69 0.275007
Target:  5'- -cGCGCCCccguCCCGGCGGACGaGCg---- -3'
miRNA:   3'- gcCGCGGG----GGGCCGCCUGC-CGagcuu -5'
29641 5' -67.3 NC_006151.1 + 137042 0.66 0.377873
Target:  5'- aCGcGUGCCCCCCGGCGc-CGGUguaccgcgUGGAg -3'
miRNA:   3'- -GC-CGCGGGGGGCCGCcuGCCGa-------GCUU- -5'
29641 5' -67.3 NC_006151.1 + 136420 0.66 0.385586
Target:  5'- gCGGgGCCCCgCGGCGGcgcacgccGCGcGCuacgUCGAc -3'
miRNA:   3'- -GCCgCGGGGgGCCGCC--------UGC-CG----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 135146 0.68 0.313238
Target:  5'- gGGCaGaCCCagCCCGGCGGgcGCGGCcCGGAc -3'
miRNA:   3'- gCCG-C-GGG--GGGCCGCC--UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 134997 0.66 0.41746
Target:  5'- gGGCGCgUCuuGGCGGG-GGCgCGGGg -3'
miRNA:   3'- gCCGCGgGGggCCGCCUgCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 134805 0.67 0.340889
Target:  5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3'
miRNA:   3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 133679 0.73 0.144029
Target:  5'- gCGGCGCgCCCCCgaGGCGGucucguCGGCggCGAc -3'
miRNA:   3'- -GCCGCG-GGGGG--CCGCCu-----GCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 133392 0.66 0.409341
Target:  5'- gCGGCGgCCggggCCGaGCGGGCGGuCUUGGc -3'
miRNA:   3'- -GCCGCgGGg---GGC-CGCCUGCC-GAGCUu -5'
29641 5' -67.3 NC_006151.1 + 133302 0.68 0.28732
Target:  5'- aGGUuCUCCCCGG-GGGCGGCccgugUCGAGg -3'
miRNA:   3'- gCCGcGGGGGGCCgCCUGCCG-----AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 131506 0.67 0.355362
Target:  5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3'
miRNA:   3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 130291 0.71 0.18689
Target:  5'- gGGCGCgCgCCGGCcGACGGCgCGGAg -3'
miRNA:   3'- gCCGCGgGgGGCCGcCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 129242 0.71 0.200395
Target:  5'- gGuGCGCCCCUCGGUGacGCGGCgCGAGg -3'
miRNA:   3'- gC-CGCGGGGGGCCGCc-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 128210 0.69 0.240602
Target:  5'- uGGCGCCCCa-GGCGugcGACGaGCUCGu- -3'
miRNA:   3'- gCCGCGGGGggCCGC---CUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 127912 0.67 0.355362
Target:  5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3'
miRNA:   3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.